Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 3.0e-168 595.1 303 100.0
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 2.2e-163 578.9 303 96.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 2.7e-161 572.0 303 95.7
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.9e-154 549.3 303 90.4
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 5.1e-152 541.2 303 89.1
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.9e-151 539.3 303 89.8
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 2.5e-151 538.9 303 88.8
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 2.5e-151 538.9 303 88.8
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 7.4e-151 537.3 303 88.4
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 9.6e-151 537.0 303 89.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.1e-150 535.8 303 87.5
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-149 533.5 303 87.1
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 6.7e-144 514.2 303 85.1
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 3.3e-143 511.9 302 83.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.6e-142 509.6 300 85.3
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.6e-142 509.6 300 84.0
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 6.3e-142 507.7 300 83.7
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 6.3e-142 507.7 303 84.5
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.1e-141 506.9 303 83.8
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.4e-141 506.5 303 82.5
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 3.1e-141 505.4 300 84.0
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 6.9e-141 504.2 300 83.7
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 83.7
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 9.0e-141 503.8 301 83.4
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.2e-140 503.4 303 82.2
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-140 503.4 303 84.2
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.2e-140 503.4 300 83.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 1.5e-140 503.1 303 84.5
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.0e-140 502.7 316 80.7
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.6e-140 502.3 303 82.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 3.4e-140 501.9 300 83.3
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.4e-140 501.9 303 82.8
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 83.0
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 82.2
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 83.2
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 7.6e-140 500.7 300 82.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-139 500.4 300 83.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.2e-139 499.2 303 82.8
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.2e-139 499.2 298 83.9
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.8e-139 498.4 303 81.8
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 8.5e-139 497.3 297 83.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 1.1e-138 496.9 301 82.1
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 80.9
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.2e-137 493.4 301 80.1
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 2.1e-137 492.7 302 80.5
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 6.1e-137 491.1 302 80.1
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 6.1e-137 491.1 300 81.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.9e-137 490.7 298 82.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 7.9e-137 490.7 300 79.3
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.8e-136 489.6 303 80.5
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.3e-136 489.2 303 82.2
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 2.3e-136 489.2 301 80.7
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 5.1e-136 488.0 303 81.2
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 5.1e-136 488.0 303 79.9
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 80.5
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 1.5e-135 486.5 300 79.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.9e-135 486.1 300 79.0
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 1.9e-135 486.1 303 79.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 1.9e-135 486.1 300 78.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 2.5e-135 485.7 301 78.7
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.6e-134 483.0 303 80.2
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.6e-134 483.0 303 79.2
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 4.8e-134 481.5 301 81.4
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 6.3e-134 481.1 301 80.1
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 6.3e-134 481.1 302 79.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 8.2e-134 480.7 303 79.9
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 8.2e-134 480.7 300 78.3
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.4e-133 479.2 294 79.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 4.1e-133 478.4 301 78.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 4.1e-133 478.4 301 80.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 4.1e-133 478.4 300 78.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.3e-133 478.0 303 76.9
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.5e-132 476.5 301 77.4
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.4e-132 475.3 305 78.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 7.7e-132 474.2 300 77.0
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.7e-131 473.0 303 77.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.7e-131 473.0 300 78.7
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 2.2e-131 472.6 300 77.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.9e-131 472.2 298 77.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 77.9
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 78.2
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 8.5e-131 470.7 303 77.9
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.9e-130 469.5 300 76.3
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.5e-130 469.2 300 77.7
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.2e-130 468.8 303 76.6
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 77.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 77.6
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 5.5e-130 468.0 303 75.6
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.2e-129 466.8 298 77.5
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.6e-129 466.5 302 77.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 1.6e-129 466.5 302 77.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 1.6e-129 466.5 302 77.5
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.1e-129 466.1 298 76.8
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 76.2
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 4.6e-129 464.9 345 70.1
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 7.9e-129 464.2 303 76.9
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.0e-128 463.8 303 76.6
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 1.4e-128 463.4 302 77.2
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 3.0e-128 462.2 303 76.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.9e-128 461.8 303 76.9
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.5e-127 459.9 303 75.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.5e-127 459.9 321 72.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 7.4e-127 457.6 301 76.1
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.7e-126 456.4 303 75.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.8e-126 455.7 300 74.3
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.8e-125 453.0 309 74.4
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.4e-125 452.6 303 73.9
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.1e-125 451.8 303 74.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.5e-124 449.9 300 75.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 5.9e-124 448.0 316 72.5
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 7.7e-124 447.6 303 74.6
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.2e-123 446.0 338 68.6
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 1.6e-121 439.9 303 72.6
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 9.7e-119 430.6 259 80.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 6.3e-118 427.9 241 86.3
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.1e-117 427.2 249 83.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.3e-115 420.2 294 70.1
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.2e-114 415.6 301 72.4
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.6e-113 412.1 340 62.6
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.6e-113 412.1 298 65.8
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.0e-112 410.6 209 96.7
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 1.4e-112 410.2 300 69.7
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.4e-112 410.2 293 68.9
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 5.2e-112 408.3 288 69.1
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 7.5e-111 404.4 312 68.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.1e-106 390.6 303 67.7
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 7.7e-100 367.9 295 60.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 6.5e-99 364.8 305 61.0
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.2e-98 362.1 300 65.7
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.2e-98 361.3 509 43.6
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 6.8e-96 354.8 209 81.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.7e-94 349.0 291 57.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 2.4e-93 346.3 200 86.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.7e-91 340.1 220 77.7
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-80 303.5 247 67.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.6e-76 290.4 245 64.5
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.7e-76 289.7 246 58.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 4.3e-74 282.3 271 51.7
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 6.2e-65 251.9 154 81.2
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 8.4e-54 214.9 281 43.1
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 3.5e-52 209.5 274 41.6
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 4.0e-48 196.1 195 56.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.1e-45 185.3 173 53.8
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-38 163.3 199 51.8
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 3.2e-37 159.8 101 76.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.5e-34 151.0 84 83.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 7.1e-29 132.1 84 77.4
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.8e-24 117.5 234 30.8
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 4.5e-23 112.8 86 69.8
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-22 111.3 87 69.0
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.4e-21 107.8 83 68.7
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 4.2e-21 106.3 151 39.1
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 2.1e-20 104.0 70 72.9
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 4.6e-20 102.8 63 77.8
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.1e-18 98.2 161 38.5
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 4.5e-15 86.3 121 46.3
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 9.1e-08 62.0 54 64.8


User provided reference genes

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