Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 3.2e-176 621.7 326 100.0
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.3e-121 440.3 282 81.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 2.6e-117 426.0 267 83.5
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.1e-112 410.6 282 76.2
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 3.6e-111 405.6 282 73.8
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 5.2e-110 401.7 282 73.8
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 8.9e-110 401.0 284 75.0
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.5e-109 400.2 284 73.9
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 6.2e-103 378.3 291 71.1
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 4.0e-102 375.6 291 70.1
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.2e-98 364.0 290 67.6
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.5e-98 362.5 286 66.1
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 8.6e-97 357.8 287 65.9
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.5e-96 357.1 287 64.5
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 1.5e-96 357.1 284 67.3
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.6e-96 355.1 287 64.5
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.6e-96 355.1 284 66.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 5.6e-96 355.1 290 64.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 7.3e-96 354.8 285 64.9
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 9.5e-96 354.4 258 69.8
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 9.5e-96 354.4 287 64.1
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.7e-95 352.1 258 69.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 4.7e-95 352.1 284 66.5
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 6.2e-95 351.7 286 66.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 1.4e-94 350.5 281 64.1
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.4e-94 350.5 284 63.7
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 2.3e-94 349.7 285 63.2
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.3e-94 349.7 288 64.2
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 3.1e-94 349.4 285 64.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 6.8e-94 348.2 288 63.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 6.8e-94 348.2 285 63.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 8.9e-94 347.8 287 62.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.2e-93 347.4 288 62.8
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.5e-93 347.1 288 62.8
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 2.6e-93 346.3 286 62.6
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.4e-93 345.9 289 62.3
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 9.9e-93 344.4 288 63.5
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 4.9e-92 342.0 288 63.2
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 1.4e-91 340.5 287 62.0
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.2e-91 339.3 285 60.7
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 4.1e-91 339.0 285 60.7
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 1.2e-90 337.4 282 62.1
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.6e-90 337.0 288 61.5
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.6e-90 337.0 288 61.5
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.7e-90 336.3 285 62.5
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 3.5e-90 335.9 288 61.5
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 4.6e-90 335.5 285 60.0
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 4.6e-90 335.5 255 66.7
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.0e-89 334.3 282 60.3
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.0e-89 334.3 282 61.7
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.7e-89 333.6 287 60.6
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 5.1e-89 332.0 288 60.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 8.6e-89 331.3 285 60.4
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.3e-88 329.3 288 60.4
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 4.3e-88 328.9 254 63.4
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.6e-88 328.6 287 59.9
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 5.6e-88 328.6 255 65.5
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 7.3e-88 328.2 291 59.5
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.2e-87 327.4 255 63.9
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.1e-87 326.6 300 58.7
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.6e-87 325.9 269 62.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.7e-87 325.5 300 58.7
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 8.1e-87 324.7 288 59.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 8.1e-87 324.7 254 63.4
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.1e-86 324.3 284 60.9
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.1e-86 322.8 251 63.3
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 4.0e-86 322.4 292 57.9
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 5.2e-86 322.0 256 64.5
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 6.8e-86 321.6 288 59.7
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.7e-84 317.0 296 56.8
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.4e-83 313.9 262 62.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.4e-83 313.2 175 88.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.2e-83 312.8 309 56.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 5.4e-83 312.0 292 56.2
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 1.2e-82 310.8 272 59.9
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.7e-82 309.7 255 61.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 1.3e-81 307.4 266 58.6
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 3.9e-81 305.8 274 59.1
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 6.6e-81 305.1 242 62.0
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 6.6e-81 305.1 217 68.2
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 4.3e-80 302.4 287 55.4
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 5.6e-80 302.0 275 57.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 7.3e-80 301.6 267 58.4
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 7.3e-80 301.6 259 59.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 9.6e-80 301.2 239 61.1
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.8e-79 299.7 272 56.2
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 2.8e-79 299.7 272 56.2
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 8.1e-79 298.1 229 63.8
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 3.1e-78 296.2 283 56.2
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 2.0e-77 293.5 254 62.2
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.6e-77 293.1 242 59.9
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 5.8e-77 292.0 266 60.5
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 4.9e-76 288.9 246 59.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.4e-76 288.1 241 62.7
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 3.5e-74 282.7 292 54.1
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.7e-73 280.4 292 55.5
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 6.2e-71 271.9 311 51.4
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.1e-70 271.2 262 55.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 5.3e-70 268.9 242 57.9
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 1.3e-68 264.2 238 57.6
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.0e-65 254.6 174 71.8
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 6.7e-65 251.9 230 52.2
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 9.6e-64 248.1 182 65.9
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 9.6e-64 248.1 246 54.1
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 1.3e-63 247.7 221 55.2
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 3.8e-60 236.1 306 45.8
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.6e-58 230.7 222 51.4
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.3e-57 226.9 221 51.1
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.5e-56 224.2 234 50.0
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 1.4e-54 217.6 270 46.3
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.3e-51 204.9 266 45.5
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 1.2e-50 204.5 186 52.7
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 4.6e-50 202.6 267 42.7
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 8.7e-49 198.4 235 51.9
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.1e-46 191.4 170 64.1
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-43 181.4 109 83.5
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 3.6e-42 176.4 229 47.2
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.9e-42 175.3 128 66.4
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 4.2e-35 152.9 102 82.4
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 4.7e-34 149.4 222 37.8
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.1e-30 136.7 130 57.7
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 1.3e-28 131.3 188 41.0
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 8.5e-28 128.6 133 50.4
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 6.1e-26 122.5 80 67.5
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 6.1e-26 122.5 80 66.2
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 5.2e-25 119.4 80 66.2
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.6e-24 117.1 78 67.9
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 4.8e-23 112.8 81 65.4
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 7.2e-19 99.0 144 37.5
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 8.8e-17 92.0 123 43.9
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 2.0e-16 90.9 60 81.7
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.3e-15 88.2 196 33.7
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 8.2e-15 85.5 80 60.0
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 1.5e-11 74.7 99 48.5
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-11 74.3 52 65.4
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-11 74.3 99 47.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.9e-11 74.3 99 47.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.2e-11 73.6 99 47.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.2e-11 72.4 99 46.5
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.4e-09 68.2 62 61.3
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.2e-08 65.1 67 46.3


User provided reference genes

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