Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 1.2e-110 403.3 224 100.0
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 7.7e-97 357.5 224 87.5
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 8.5e-96 354.0 224 87.5
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 3.1e-90 335.5 227 85.9
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 6.8e-69 264.6 224 71.9
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 1.5e-68 263.5 224 69.6
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 2.6e-68 262.7 224 70.1
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 3.4e-68 262.3 224 69.6
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 1.8e-61 240.0 224 68.3
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 1.5e-60 236.9 224 68.8
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 1.9e-58 229.9 223 65.5
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 1.3e-56 223.8 226 64.2
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 2.6e-52 209.5 224 59.4
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 1.7e-51 206.8 223 61.9
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-50 204.1 243 58.4
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 1.0e-48 197.6 251 56.6
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 2.7e-41 172.9 94 95.7
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 2.9e-19 99.8 92 59.8
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 5.0e-19 99.0 93 59.1
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 8.5e-19 98.2 92 59.8
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 1.9e-18 97.1 93 57.0
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 5.5e-18 95.5 92 57.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 9.3e-18 94.7 93 54.8
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-17 94.0 92 56.5
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.1e-17 93.6 92 55.4
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 4.6e-17 92.4 92 55.4
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 6.1e-17 92.0 92 55.4
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-16 90.9 92 54.3
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 9.7e-15 84.7 89 51.7
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 9.7e-15 84.7 124 43.5
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 4.8e-14 82.4 83 50.6
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.1e-13 79.7 83 54.2
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 5.3e-13 79.0 78 51.3
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 2.6e-12 76.6 83 48.2
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 2.6e-12 76.6 131 38.9
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 5.9e-12 75.5 62 58.1
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 8.5e-11 71.6 129 36.4
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 8.5e-11 71.6 53 66.0
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 1.1e-10 71.2 46 71.7
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-10 71.2 54 63.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 1.4e-10 70.9 130 35.4
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 1.4e-10 70.9 46 71.7
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 1.4e-10 70.9 46 69.6
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 2.5e-10 70.1 69 55.1
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 4.2e-10 69.3 67 55.2
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 1.2e-09 67.8 67 52.2
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 1.6e-09 67.4 54 61.1
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.6e-09 67.4 117 40.2
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.1e-09 67.0 125 36.0
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 2.1e-09 67.0 64 53.1
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.6e-09 66.2 71 49.3
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 3.6e-09 66.2 76 46.1
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 4.6e-09 65.9 59 54.2
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 4.6e-09 65.9 60 55.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 4.6e-09 65.9 70 47.1
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 7.9e-09 65.1 47 63.8
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 1.0e-08 64.7 72 48.6
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-08 64.3 63 54.0
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 1.4e-08 64.3 64 51.6
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 1.8e-08 63.9 63 52.4
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 5.1e-08 62.4 96 37.5
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 5.1e-08 62.4 73 47.9
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 5.1e-08 62.4 95 41.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-08 62.4 54 55.6
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 8.8e-08 61.6 106 34.9
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 8.8e-08 61.6 73 45.2
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 1.1e-07 61.2 64 48.4
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 1.1e-07 61.2 70 45.7
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 1.1e-07 61.2 111 38.7
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 1.5e-07 60.8 71 49.3
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 2.0e-07 60.5 60 46.7
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 2.0e-07 60.5 78 44.9
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 2.0e-07 60.5 76 40.8
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 3.3e-07 59.7 139 33.8
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 5.7e-07 58.9 115 33.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 5.7e-07 58.9 61 44.3
Nn2g15526 Nelumbo nucifera HOM05D009845 ORTHO05D006814 5.7e-07 58.9 64 53.1
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 5.7e-07 58.9 67 43.3
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 7.4e-07 58.5 61 44.3
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 7.4e-07 58.5 92 43.5
Thhalv10001774m.g Eutrema salsugineum HOM05D011069 ORTHO05D010624 1.3e-06 57.8 60 55.0
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.3e-06 57.8 60 45.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.3e-06 57.8 56 48.2
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.3e-06 57.8 56 48.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 2.2e-06 57.0 65 43.1
Ah.01g013130 Amaranthus hybridus HOM05D007797 ORTHO05D009741 2.8e-06 56.6 45 55.6
BcaC01g05061 Brassica carinata HOM05D011069 ORTHO05D010624 3.7e-06 56.2 93 44.1
BcaNung05601 Brassica carinata HOM05D011069 ORTHO05D010624 3.7e-06 56.2 60 55.0
C03p30640 Brassica napus HOM05D011069 ORTHO05D010624 3.7e-06 56.2 93 44.1
BolC3t15414H Brassica oleracea HOM05D011069 ORTHO05D010624 3.7e-06 56.2 93 44.1
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 3.7e-06 56.2 60 43.3
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.7e-06 56.2 60 43.3
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 4.8e-06 55.8 61 42.6
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 4.8e-06 55.8 67 40.3
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 4.8e-06 55.8 44 59.1
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 6.3e-06 55.5 59 44.1
BcaB01g03211 Brassica carinata HOM05D011069 ORTHO05D010624 6.3e-06 55.5 47 59.6
Sp4g28540 Schrenkiella parvula HOM05D011069 ORTHO05D010624 6.3e-06 55.5 60 53.3
BraA05t19128Z Brassica rapa HOM05D011069 ORTHO05D010624 8.2e-06 55.1 47 59.6
Carub.0004s2920 Capsella rubella HOM05D011069 ORTHO05D010624 8.2e-06 55.1 60 55.0
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 8.2e-06 55.1 116 33.6


User provided reference genes

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