Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 4.9e-44 180.6 84 100.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 1.8e-38 162.2 82 85.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.6e-37 158.3 80 87.5
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.6e-37 158.3 79 88.6
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.7e-37 157.1 80 86.2
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 7.5e-37 156.8 83 83.1
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.3e-36 156.0 83 83.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.9e-36 154.8 77 88.3
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 6.4e-36 153.7 79 84.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.4e-35 152.5 83 80.7
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.8e-35 152.1 83 80.7
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.4e-35 150.6 83 78.3
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.7e-34 148.3 83 78.3
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 3.5e-34 147.9 87 75.9
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.0e-33 146.4 73 87.7
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.7e-33 145.6 80 77.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.3e-33 145.2 73 86.3
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.3e-33 145.2 79 81.0
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.3e-33 145.2 79 79.7
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 8.6e-33 143.3 79 79.7
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 8.6e-33 143.3 79 79.7
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 8.6e-33 143.3 79 79.7
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.1e-32 142.9 76 80.3
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-32 142.9 76 80.3
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-32 142.9 79 79.7
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.5e-32 142.5 79 77.2
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.9e-32 142.1 78 79.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.5e-32 141.7 79 75.9
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.3e-32 141.4 76 78.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.3e-32 141.4 76 78.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.3e-32 141.4 76 78.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 4.3e-32 141.0 68 91.2
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.1e-31 138.7 83 71.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.6e-31 137.9 76 77.6
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.6e-31 137.9 76 77.6
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 3.6e-31 137.9 79 73.4
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 4.7e-31 137.5 83 72.3
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 6.2e-31 137.1 68 89.7
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 8.0e-31 136.7 79 72.2
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.1e-30 136.3 80 71.2
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.8e-30 135.6 79 70.9
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.8e-30 135.6 85 70.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.3e-30 135.2 79 77.2
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 2.3e-30 135.2 79 77.2
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 2.3e-30 135.2 79 77.2
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.3e-30 135.2 85 71.8
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 3.1e-30 134.8 83 73.5
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.0e-30 134.4 81 74.1
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 4.0e-30 134.4 81 74.1
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 85 69.4
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 5.2e-30 134.0 80 75.0
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 5.2e-30 134.0 80 73.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 84 71.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 84 71.4
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 76 73.7
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 78 71.8
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 78 71.8
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 5.2e-30 134.0 81 74.1
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 6.8e-30 133.7 85 71.8
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.8e-30 133.7 80 73.8
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 6.8e-30 133.7 80 73.8
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 6.8e-30 133.7 79 72.2
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.5e-29 132.5 84 70.2
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 2.0e-29 132.1 76 73.7
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.6e-29 131.7 79 70.9
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.6e-29 131.7 84 67.9
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.6e-29 131.7 80 73.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 3.4e-29 131.3 79 69.6
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.4e-29 131.0 79 69.6
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.4e-29 131.0 70 80.0
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.4e-29 131.0 79 74.7
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.4e-29 131.0 79 73.4
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.8e-29 130.6 78 74.4
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.3e-28 129.4 85 68.2
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.7e-28 129.0 63 87.3
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 2.2e-28 128.6 79 68.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 79 68.4
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.9e-28 128.3 79 67.1
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.7e-28 127.9 73 72.6
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 4.9e-28 127.5 79 72.2
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 6.4e-28 127.1 79 73.4
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 8.3e-28 126.7 77 68.8
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 8.3e-28 126.7 77 68.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 8.3e-28 126.7 75 66.7
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.4e-27 125.9 75 70.7
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.9e-27 125.6 79 69.6
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 2.4e-27 125.2 92 64.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 3.2e-27 124.8 77 67.5
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.2e-27 124.8 79 70.9
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 4.1e-27 124.4 79 70.9
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.0e-27 123.6 77 71.4
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 9.2e-27 123.2 79 69.6
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.2e-26 122.9 79 69.6
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.2e-26 122.9 70 71.4
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.2e-26 122.9 79 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 2.0e-26 122.1 80 62.5
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.0e-26 122.1 75 72.0
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.0e-26 122.1 79 68.4
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 3.5e-26 121.3 88 60.2
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.5e-26 121.3 79 68.4
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 3.5e-26 121.3 79 68.4
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 6.0e-26 120.6 83 67.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-25 119.4 91 58.2
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.3e-25 119.4 79 62.0
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.7e-25 119.0 65 76.9
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.7e-25 119.0 74 70.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 76 65.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 3.0e-25 118.2 73 64.4
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 6.6e-25 117.1 62 79.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 8.6e-25 116.7 79 67.1
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 3.3e-24 114.8 80 65.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 4.3e-24 114.4 79 62.0
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 4.3e-24 114.4 79 62.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 7.3e-24 113.6 79 67.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.2e-23 112.8 108 49.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-23 112.8 63 76.2
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-23 112.8 63 76.2
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.6e-23 112.5 72 69.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.8e-23 111.7 74 66.2
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.8e-23 111.7 79 63.3
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 3.6e-23 111.3 80 62.5
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.4e-22 109.4 85 58.8
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.4e-22 109.4 54 85.2
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.8e-22 109.0 53 84.9
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.8e-22 109.0 63 71.4
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.8e-22 109.0 58 79.3
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.3e-22 108.6 52 86.5
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.8e-22 107.1 83 63.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 2.0e-21 105.5 83 57.8
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.6e-21 105.1 83 57.8
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 7.5e-21 103.6 61 75.4
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 7.5e-21 103.6 80 63.8
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 9.9e-21 103.2 71 54.9
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.9e-21 103.2 78 60.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.7e-20 102.4 63 66.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 2.2e-20 102.1 69 58.0
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.9e-20 101.7 58 74.1
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.9e-20 101.7 54 79.6
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 8.3e-20 100.1 52 82.7
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.1e-19 99.8 56 76.8
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.4e-19 99.4 76 64.5
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 2.1e-18 95.5 72 58.3
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 2.1e-18 95.5 61 68.9
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.1e-18 95.5 52 82.7
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 4.6e-18 94.4 77 51.9
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.0e-17 93.2 54 68.5
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.5e-16 89.4 97 45.4
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.5e-16 86.7 94 48.9
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 2.1e-15 85.5 40 92.5
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 3.6e-15 84.7 64 53.1
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.4e-14 82.8 72 55.6
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.4e-14 82.0 63 61.9
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 3.8e-12 74.7 59 62.7
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 8.4e-12 73.6 59 52.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 9.2e-11 70.1 45 68.9
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.9e-09 64.7 58 46.6
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.9e-09 64.7 40 62.5
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.5e-08 62.8 62 45.2
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 9.0e-06 53.5 44 47.7


User provided reference genes

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