Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6867 Trifolium pratense HOM05D002120 ORTHO05D002217 6.0e-26 120.6 84 100.0
Duzib168G0899 Durio zibethinus HOM05D002120 ORTHO05D002217 6.8e-14 80.5 81 80.2
Lj1P360T22 Lonicera japonica HOM05D002120 ORTHO05D002217 8.9e-14 80.1 81 80.2
Cpa.g.sc234.11 Carica papaya HOM05D002120 ORTHO05D002217 1.2e-13 79.7 81 79.0
Lalb_Chr24g0397001 Lupinus albus HOM05D002120 ORTHO05D002217 1.5e-13 79.3 81 80.2
Gohir.A05G068100 Gossypium hirsutum HOM05D002120 ORTHO05D002217 2.0e-13 79.0 81 79.0
Haze_23078 Corylus avellana HOM05D002120 ORTHO05D002217 2.6e-13 78.6 81 69.1
Thecc.09G226800 Theobroma cacao HOM05D002120 ORTHO05D002217 3.4e-13 78.2 79 78.5
COL.COLO4_24838 Corchorus olitorius HOM05D002120 ORTHO05D002217 9.9e-13 76.6 81 74.1
Atru.chr3.2562 Acer truncatum HOM05D002120 ORTHO05D002217 1.3e-12 76.3 77 83.1
COL.COLO4_24840 Corchorus olitorius HOM05D002120 ORTHO05D002217 1.3e-12 76.3 81 77.8
Eucgr.B03671 Eucalyptus grandis HOM05D002120 ORTHO05D002217 1.3e-12 76.3 81 75.3
PGR102G0789 Punica granatum HOM05D002120 ORTHO05D002217 1.7e-12 75.9 81 77.8
BcaC09g49025 Brassica carinata HOM05D002120 ORTHO05D002217 2.2e-12 75.5 81 76.5
C01p43380 Brassica napus HOM05D002120 ORTHO05D002217 2.2e-12 75.5 81 76.5
BolC1t04300H Brassica oleracea HOM05D002120 ORTHO05D002217 2.2e-12 75.5 81 76.5
BraA01t03505Z Brassica rapa HOM05D002120 ORTHO05D002217 2.2e-12 75.5 81 76.5
COL.COLO4_24839 Corchorus olitorius HOM05D002120 ORTHO05D002217 2.2e-12 75.5 81 75.3
Dinv08043 Davidia involucrata HOM05D002120 ORTHO05D002217 2.2e-12 75.5 80 67.5
RcHm_v2.0_Chr5g0077331 Rosa chinensis HOM05D002120 ORTHO05D002217 2.9e-12 75.1 81 76.5
DCAR_002050 Daucus carota HOM05D002120 ORTHO05D002217 3.8e-12 74.7 81 76.5
FvH4_3g43270 Fragaria vesca HOM05D002120 ORTHO05D002217 3.8e-12 74.7 81 76.5
FAN11G3909 Fragaria x ananassa HOM05D002120 ORTHO05D002217 3.8e-12 74.7 81 76.5
FAN16G0280 Fragaria x ananassa HOM05D002120 ORTHO05D002217 3.8e-12 74.7 81 76.5
FAN25G0860 Fragaria x ananassa HOM05D002120 ORTHO05D002217 3.8e-12 74.7 81 76.5
AL3G34740 Arabidopsis lyrata HOM05D002120 ORTHO05D002217 4.9e-12 74.3 81 75.3
AT3G20820 Arabidopsis thaliana HOM05D002120 ORTHO05D002217 4.9e-12 74.3 81 75.3
A01p34010 Brassica napus HOM05D002120 ORTHO05D002217 4.9e-12 74.3 81 75.3
Manes.06G167500 Manihot esculenta HOM05D002120 ORTHO05D002217 4.9e-12 74.3 79 79.7
Sp3g18840 Schrenkiella parvula HOM05D002120 ORTHO05D002217 4.9e-12 74.3 81 75.3
TWI34G1440 Tripterygium wilfordii HOM05D002120 ORTHO05D002217 4.9e-12 74.3 84 75.0
CARHR096680 Cardamine hirsuta HOM05D002120 ORTHO05D002217 6.4e-12 73.9 81 75.3
BcaB06g26155 Brassica carinata HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
BcaC05g28275 Brassica carinata HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
A05p27960 Brassica napus HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
C05p43250 Brassica napus HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
BolC5t33055H Brassica oleracea HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
BraA05t21679Z Brassica rapa HOM05D002120 ORTHO05D002217 8.4e-12 73.6 81 75.3
CSS0036964 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 8.4e-12 73.6 76 68.4
BcaB04g20626 Brassica carinata HOM05D002120 ORTHO05D002217 1.1e-11 73.2 81 74.1
CSS0013601 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 1.1e-11 73.2 76 69.7
Sed0018219 Sechium edule HOM05D002120 ORTHO05D002217 1.4e-11 72.8 81 64.2
Potri.001G017500 Populus trichocarpa HOM05D002120 ORTHO05D002217 2.4e-11 72.0 80 77.5
Aa31LG8G7650 Aethionema arabicum HOM05D002120 ORTHO05D002217 4.1e-11 71.2 81 72.8
FAN21G1785 Fragaria x ananassa HOM05D002120 ORTHO05D002217 5.4e-11 70.9 81 74.1
CsaV3_4G024080 Cucumis sativus L. HOM05D002120 ORTHO05D002217 7.1e-11 70.5 81 71.6
Psat5g288080 Pisum sativum HOM05D002120 ORTHO05D002217 7.1e-11 70.5 75 80.0
COL.COLO4_24841 Corchorus olitorius HOM05D002120 ORTHO05D002217 9.2e-11 70.1 81 71.6
Manes.14G013200 Manihot esculenta HOM05D002120 ORTHO05D002217 9.2e-11 70.1 80 77.5
TWI60G0167 Tripterygium wilfordii HOM05D002120 ORTHO05D002217 9.2e-11 70.1 84 72.6
CANSAT54G0736 Cannabis sativa HOM05D002120 ORTHO05D002217 1.2e-10 69.7 76 80.3
Sabra01G0012200 Salix brachista HOM05D002120 ORTHO05D002217 1.2e-10 69.7 80 75.0
MSTRG.21404 Avicennia marina HOM05D002120 ORTHO05D002217 2.1e-10 68.9 80 76.2
CSS0006112 Camellia sinensis var. sinensis HOM05D002120 ORTHO05D002217 2.1e-10 68.9 76 69.7
CANSAT01G1671 Cannabis sativa HOM05D002120 ORTHO05D002217 2.7e-10 68.6 81 74.1
Carub.0003s2078 Capsella rubella HOM05D002120 ORTHO05D002217 2.7e-10 68.6 76 77.6
SalBow4G2984 Salvia bowleyana HOM05D002120 ORTHO05D002217 2.7e-10 68.6 81 74.1
CAN.G1255.1 Capsicum annuum HOM05D002120 ORTHO05D002217 3.5e-10 68.2 81 74.1
Nitab4.5_0000175g0030 Nicotiana tabacum HOM05D002120 ORTHO05D002217 4.6e-10 67.8 81 74.1
Nitab4.5_0002278g0040 Nicotiana tabacum HOM05D002120 ORTHO05D002217 4.6e-10 67.8 81 74.1
Lsat_1_v5_gn_1_66441 Lactuca sativa HOM05D002120 ORTHO05D002217 7.8e-10 67.0 81 72.8
Oeu055807.1 Olea europaea HOM05D002120 ORTHO05D002217 7.8e-10 67.0 81 72.8
PGSC0003DMG400001252 Solanum tuberosum HOM05D002120 ORTHO05D002217 7.8e-10 67.0 81 74.1
Lsat_1_v5_gn_2_100901 Lactuca sativa HOM05D002120 ORTHO05D002217 1.0e-09 66.6 81 72.8
Medtr2g098250 Medicago truncatula HOM05D002120 ORTHO05D002217 1.0e-09 66.6 72 73.6
ECA233G3455 Erigeron canadensis HOM05D002120 ORTHO05D002217 1.3e-09 66.2 81 72.8
ECA238G1392 Erigeron canadensis HOM05D002120 ORTHO05D002217 1.3e-09 66.2 81 75.3
Migut.D00569 Erythranthe guttata HOM05D002120 ORTHO05D002217 1.3e-09 66.2 81 74.1
HanXRQChr13g0403971 Helianthus annuus HOM05D002120 ORTHO05D002217 1.3e-09 66.2 82 72.0
Lj3g0010303 Lotus japonicus HOM05D002120 ORTHO05D002217 1.3e-09 66.2 73 74.0
Peaxi162Scf00839g00013 Petunia axillaris HOM05D002120 ORTHO05D002217 1.3e-09 66.2 81 74.1
Sed0000844 Sechium edule HOM05D002120 ORTHO05D002217 1.3e-09 66.2 73 76.7
Solyc11g056680.1 Solanum lycopersicum HOM05D002120 ORTHO05D002217 1.3e-09 66.2 81 74.1
Gorai.009G072100 Gossypium raimondii HOM05D002120 ORTHO05D002217 1.7e-09 65.9 76 76.3
Potri.003G207000 Populus trichocarpa HOM05D002120 ORTHO05D002217 1.7e-09 65.9 79 75.9
Sopen11g023470 Solanum pennellii HOM05D002120 ORTHO05D002217 1.7e-09 65.9 81 72.8
Eucgr.J00794 Eucalyptus grandis HOM05D002120 ORTHO05D002217 2.3e-09 65.5 76 77.6
Lsat_1_v5_gn_6_48301 Lactuca sativa HOM05D002120 ORTHO05D002217 3.0e-09 65.1 81 72.8
QL01p005650 Quercus lobata HOM05D002120 ORTHO05D002217 3.0e-09 65.1 75 68.0
HanXRQChr03g0070261 Helianthus annuus HOM05D002120 ORTHO05D002217 5.1e-09 64.3 81 72.8
HanXRQChr13g0407051 Helianthus annuus HOM05D002120 ORTHO05D002217 5.1e-09 64.3 81 72.8
Ca_01282_v3 Cicer arietinum L. HOM05D002120 ORTHO05D002217 8.7e-09 63.5 28 92.9
Cc01_g04720 Coffea canephora HOM05D002120 ORTHO05D002217 8.7e-09 63.5 75 77.3
SGA_v2.0_scaffold247G44838 Striga asiatica HOM05D002120 ORTHO05D002217 8.7e-09 63.5 81 71.6
MD03G1023300 Malus domestica HOM05D002120 ORTHO05D002217 1.1e-08 63.2 75 49.3
MELO3C014614.2 Cucumis melo HOM05D002120 ORTHO05D002217 1.5e-08 62.8 74 70.3
DCAR_029942 Daucus carota HOM05D002120 ORTHO05D002217 1.5e-08 62.8 81 70.4
HanXRQChr13g0406021 Helianthus annuus HOM05D002120 ORTHO05D002217 1.5e-08 62.8 81 71.6
THA.LOC104821756 Tarenaya hassleriana HOM05D002120 ORTHO05D002217 1.5e-08 62.8 75 73.3
CiPaw.13G164100 Carya illinoinensis HOM05D002120 ORTHO05D002217 3.3e-08 61.6 26 96.2
Sabra03G0152700 Salix brachista HOM05D002120 ORTHO05D002217 3.3e-08 61.6 80 75.0
Dinv36290 Davidia involucrata HOM05D002120 ORTHO05D002217 4.3e-08 61.2 75 57.3
Glyma.13G341500 Glycine max HOM05D002120 ORTHO05D002217 7.3e-08 60.5 27 88.9
MD11G1028200 Malus domestica HOM05D002120 ORTHO05D002217 9.6e-08 60.1 74 48.6
Actinidia06882 Actinidia chinensis HOM05D002120 ORTHO05D002217 1.6e-07 59.3 73 76.7
Carub.0006s1112 Capsella rubella HOM05D002120 ORTHO05D002217 1.6e-07 59.3 73 76.7
Cpa.g.sc84.87 Carica papaya HOM05D002120 ORTHO05D002217 2.1e-07 58.9 26 92.3
Hma1.2p1_2934F.1_g330580 Hydrangea macrophylla HOM05D002120 ORTHO05D002217 2.1e-07 58.9 72 61.1
Phvul.L010843 Phaseolus vulgaris HOM05D002120 ORTHO05D002217 2.1e-07 58.9 27 85.2
BolC9t59252H Brassica oleracea HOM05D002120 ORTHO05D002217 3.6e-07 58.2 73 69.9
Cc01_g04730 Coffea canephora HOM05D002120 ORTHO05D002217 3.6e-07 58.2 26 88.5
THA.LOC104804972 Tarenaya hassleriana HOM05D002120 ORTHO05D002217 3.6e-07 58.2 75 74.7
THA.LOC104811147 Tarenaya hassleriana HOM05D002120 ORTHO05D002217 3.6e-07 58.2 75 64.0
BcaC04g19159 Brassica carinata HOM05D002120 ORTHO05D002217 8.1e-07 57.0 73 75.3
A10p25220 Brassica napus HOM05D002120 ORTHO05D002217 8.1e-07 57.0 73 75.3
C09p64150 Brassica napus HOM05D002120 ORTHO05D002217 8.1e-07 57.0 73 75.3
BraA10t44585Z Brassica rapa HOM05D002120 ORTHO05D002217 8.1e-07 57.0 73 75.3
Phvul.005G036600 Phaseolus vulgaris HOM05D002120 ORTHO05D002217 1.1e-06 56.6 27 81.5
Prupe.6G022400 Prunus persica HOM05D002120 ORTHO05D002217 1.1e-06 56.6 26 84.6
ClCG02G023430 Citrullus lanatus HOM05D002120 ORTHO05D002217 1.4e-06 56.2 26 84.6
Ciclev10015508m.g Citrus clementina HOM05D002120 ORTHO05D002217 1.4e-06 56.2 26 84.6
Lalb_Chr25g0283201 Lupinus albus HOM05D002120 ORTHO05D002217 1.4e-06 56.2 27 77.8
Potri.009G064300 Populus trichocarpa HOM05D002120 ORTHO05D002217 1.8e-06 55.8 27 81.5
Potri.001G269800 Populus trichocarpa HOM05D002120 ORTHO05D002217 2.4e-06 55.5 27 77.8
AL6G23510 Arabidopsis lyrata HOM05D002120 ORTHO05D002217 3.1e-06 55.1 75 66.7
CARHR200510 Cardamine hirsuta HOM05D002120 ORTHO05D002217 4.0e-06 54.7 73 74.0
CiPaw.13G003000 Carya illinoinensis HOM05D002120 ORTHO05D002217 4.0e-06 54.7 27 77.8
Ca_20584_v3 Cicer arietinum L. HOM05D002120 ORTHO05D002217 4.0e-06 54.7 26 84.6
Lj3g0004135 Lotus japonicus HOM05D002120 ORTHO05D002217 4.0e-06 54.7 27 74.1
Sabra09G0047600 Salix brachista HOM05D002120 ORTHO05D002217 4.0e-06 54.7 27 77.8
Prupe.2G009800 Prunus persica HOM05D002120 ORTHO05D002217 5.2e-06 54.3 27 77.8
TPR.G14043 Trifolium pratense HOM05D002120 ORTHO05D002217 5.2e-06 54.3 27 81.5
TAR623G1419 Trochodendron aralioides HOM05D002120 ORTHO05D002217 5.2e-06 54.3 27 77.8
Cc02_g27550 Coffea canephora HOM05D002120 ORTHO05D002217 6.9e-06 53.9 27 77.8
Duzib268G1576 Durio zibethinus HOM05D002120 ORTHO05D002217 6.9e-06 53.9 27 81.5
LjContig00081g0016558 Lotus japonicus HOM05D002120 ORTHO05D002217 6.9e-06 53.9 27 77.8
Sed0022689 Sechium edule HOM05D002120 ORTHO05D002217 6.9e-06 53.9 27 77.8
TAR369G0934 Trochodendron aralioides HOM05D002120 ORTHO05D002217 6.9e-06 53.9 26 80.8
arahy.Tifrunner.gnm1.ann1.CYMD29 Arachis hypogaea HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 85.2
ClCG10G012510 Citrullus lanatus HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 74.1
COL.COLO4_23897 Corchorus olitorius HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 77.8
CsaV3_3G032280 Cucumis sativus L. HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 74.1
Gohir.A08G027300 Gossypium hirsutum HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 81.5
Gohir.D08G038000 Gossypium hirsutum HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 81.5
Gorai.004G036000 Gossypium raimondii HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 81.5
RcHm_v2.0_Chr1g0314931 Rosa chinensis HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 77.8
Sed0014666 Sechium edule HOM05D002120 ORTHO05D002217 9.0e-06 53.5 27 74.1
Sc16g0011640 Simmondsia chinensis HOM05D002120 ORTHO05D002217 9.0e-06 53.5 74 73.0


User provided reference genes

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