Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6833 Trifolium pratense HOM05D007264 ORTHO05D008639 7.6e-76 287.3 174 100.0
Medtr1g071380 Medicago truncatula HOM05D007264 ORTHO05D008639 4.5e-44 181.8 178 67.4
Medtr2g097680 Medicago truncatula HOM05D007264 ORTHO05D008639 6.5e-43 177.9 179 67.0
Psat5g287960 Pisum sativum HOM05D007264 ORTHO05D008639 4.8e-38 161.8 169 63.9
Lj3g0004900 Lotus japonicus HOM05D007264 ORTHO05D008639 4.9e-22 108.6 181 52.5
VMungo1080G0594 Vigna mungo HOM05D007264 ORTHO05D008639 2.7e-20 102.8 138 54.3
Ca_01307_v3 Cicer arietinum L. HOM05D007264 ORTHO05D008639 7.8e-20 101.3 118 66.9
Phvul.L007743 Phaseolus vulgaris HOM05D007264 ORTHO05D008639 1.1e-18 97.4 178 48.3
Lalb_Chr24g0394031 Lupinus albus HOM05D007264 ORTHO05D008639 2.5e-18 96.3 184 46.2
arahy.Tifrunner.gnm1.ann1.EHGE9H Arachis hypogaea HOM05D007264 ORTHO05D008639 2.8e-17 92.8 189 43.4
arahy.Tifrunner.gnm1.ann1.4DS88F Arachis hypogaea HOM05D007264 ORTHO05D008639 1.8e-16 90.1 186 41.9
Glyma.13G338500 Glycine max HOM05D007264 ORTHO05D008639 3.4e-15 85.9 178 49.4
Peaxi162Scf00038g02028 Petunia axillaris HOM05D007264 ORTHO05D008639 4.4e-15 85.5 72 61.1
Hund18892 Selenicereus undatus HOM05D007264 ORTHO05D008639 7.5e-15 84.7 202 41.6
AUR62020022 Chenopodium quinoa HOM05D007264 ORTHO05D008639 1.7e-14 83.6 112 49.1
CsaV3_6G016660 Cucumis sativus L. HOM05D007264 ORTHO05D008639 2.2e-14 83.2 129 45.0
Lsat_1_v5_gn_5_169441 Lactuca sativa HOM05D007264 ORTHO05D008639 2.2e-14 83.2 104 53.8
Prupe.6G071500 Prunus persica HOM05D007264 ORTHO05D008639 3.7e-14 82.4 144 42.4
Solyc05g009300.1 Solanum lycopersicum HOM05D007264 ORTHO05D008639 3.7e-14 82.4 80 57.5
Eucgr.J02035 Eucalyptus grandis HOM05D007264 ORTHO05D008639 4.9e-14 82.0 179 41.3
Gorai.001G112100 Gossypium raimondii HOM05D007264 ORTHO05D008639 4.9e-14 82.0 151 39.1
Sopen05g005050 Solanum pennellii HOM05D007264 ORTHO05D008639 8.3e-14 81.3 126 46.8
MELO3C025896.2 Cucumis melo HOM05D007264 ORTHO05D008639 1.1e-13 80.9 131 42.0
MD03G1086900 Malus domestica HOM05D007264 ORTHO05D008639 1.1e-13 80.9 189 40.2
PGR119G0519 Punica granatum HOM05D007264 ORTHO05D008639 1.1e-13 80.9 178 41.6
PGSC0003DMG400014567 Solanum tuberosum HOM05D007264 ORTHO05D008639 1.1e-13 80.9 81 56.8
Glyma.15G035800 Glycine max HOM05D007264 ORTHO05D008639 1.4e-13 80.5 154 50.0
RcHm_v2.0_Chr5g0066101 Rosa chinensis HOM05D007264 ORTHO05D008639 1.8e-13 80.1 141 41.8
MD11G1096000 Malus domestica HOM05D007264 ORTHO05D008639 2.4e-13 79.7 172 41.9
QL01p030632 Quercus lobata HOM05D007264 ORTHO05D008639 2.4e-13 79.7 139 41.0
Gohir.A07G099900 Gossypium hirsutum HOM05D007264 ORTHO05D008639 4.1e-13 79.0 165 41.2
COL.COLO4_18565 Corchorus olitorius HOM05D007264 ORTHO05D008639 5.4e-13 78.6 175 38.9
FAN25G3374 Fragaria x ananassa HOM05D007264 ORTHO05D008639 5.4e-13 78.6 146 40.4
vmacro03038 Vaccinium macrocarpon HOM05D007264 ORTHO05D008639 5.4e-13 78.6 174 39.1
EL10Ac7g16055 Beta vulgaris HOM05D007264 ORTHO05D008639 1.2e-12 77.4 160 40.0
Haze_24148 Corylus avellana HOM05D007264 ORTHO05D008639 1.2e-12 77.4 181 39.2
Nitab4.5_0006942g0010 Nicotiana tabacum HOM05D007264 ORTHO05D008639 2.0e-12 76.6 171 38.0
Sc25g0001650 Simmondsia chinensis HOM05D007264 ORTHO05D008639 2.0e-12 76.6 62 67.7
TWI79G0692 Tripterygium wilfordii HOM05D007264 ORTHO05D008639 2.0e-12 76.6 173 36.4
MSTRG.11098 Avicennia marina HOM05D007264 ORTHO05D008639 3.5e-12 75.9 65 60.0
Oeu002437.1 Olea europaea HOM05D007264 ORTHO05D008639 3.5e-12 75.9 144 40.3
Gohir.D07G104200 Gossypium hirsutum HOM05D007264 ORTHO05D008639 4.6e-12 75.5 132 40.2
Ciclev10029397m.g Citrus clementina HOM05D007264 ORTHO05D008639 6.0e-12 75.1 175 36.0
Migut.D00885 Erythranthe guttata HOM05D007264 ORTHO05D008639 6.0e-12 75.1 175 38.3
FvH4_3g36880 Fragaria vesca HOM05D007264 ORTHO05D008639 6.0e-12 75.1 182 36.8
FAN11G3606 Fragaria x ananassa HOM05D007264 ORTHO05D008639 6.0e-12 75.1 182 36.8
FAN21G2492 Fragaria x ananassa HOM05D007264 ORTHO05D008639 7.8e-12 74.7 141 39.0
Sed0006840 Sechium edule HOM05D007264 ORTHO05D008639 7.8e-12 74.7 139 43.9
ClCG02G019960 Citrullus lanatus HOM05D007264 ORTHO05D008639 1.0e-11 74.3 124 44.4
Nn8g40679 Nelumbo nucifera HOM05D007264 ORTHO05D008639 1.7e-11 73.6 144 36.8
Oeu002436.1 Olea europaea HOM05D007264 ORTHO05D008639 1.7e-11 73.6 144 41.7
PSO513G0105 Papaver somniferum HOM05D007264 ORTHO05D008639 1.7e-11 73.6 120 39.2
Cfa011538 Carpinus fangiana HOM05D007264 ORTHO05D008639 3.9e-11 72.4 143 40.6
ECA248G2900 Erigeron canadensis HOM05D007264 ORTHO05D008639 5.0e-11 72.0 96 58.3
Nitab4.5_0014843g0020 Nicotiana tabacum HOM05D007264 ORTHO05D008639 5.0e-11 72.0 185 36.8
AUR62001749 Chenopodium quinoa HOM05D007264 ORTHO05D008639 6.6e-11 71.6 139 46.0
Thecc.09G317100 Theobroma cacao HOM05D007264 ORTHO05D008639 6.6e-11 71.6 181 36.5
PSO339G5862 Papaver somniferum HOM05D007264 ORTHO05D008639 1.1e-10 70.9 120 41.7
Cc01_g13240 Coffea canephora HOM05D007264 ORTHO05D008639 1.5e-10 70.5 105 46.7
Nn2g13417 Nelumbo nucifera HOM05D007264 ORTHO05D008639 1.9e-10 70.1 97 44.3
GSVIVG01024917001 Vitis vinifera HOM05D007264 ORTHO05D008639 4.3e-10 68.9 144 41.0
Carub.0004s1020 Capsella rubella HOM05D007264 ORTHO05D008639 7.3e-10 68.2 125 38.4
CSS0034107 Camellia sinensis var. sinensis HOM05D007264 ORTHO05D008639 1.2e-09 67.4 142 37.3
CiPaw.14G066400 Carya illinoinensis HOM05D007264 ORTHO05D008639 1.2e-09 67.4 138 38.4
Dinv17036 Davidia involucrata HOM05D007264 ORTHO05D008639 1.2e-09 67.4 181 41.4
Dinv42982 Davidia involucrata HOM05D007264 ORTHO05D008639 1.2e-09 67.4 181 41.4
Dinv43117 Davidia involucrata HOM05D007264 ORTHO05D008639 1.2e-09 67.4 181 41.4
MBI14_g08028_MAGBIO Magnolia biondii HOM05D007264 ORTHO05D008639 1.2e-09 67.4 149 40.3
TAR560G0010 Trochodendron aralioides HOM05D007264 ORTHO05D008639 1.2e-09 67.4 147 42.2
Cpa.g.sc81.107 Carica papaya HOM05D007264 ORTHO05D008639 1.6e-09 67.0 107 44.9
AL41U10070 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 2.1e-09 66.6 132 36.4
AL4G23740 Arabidopsis lyrata HOM05D007264 ORTHO05D008639 2.1e-09 66.6 132 36.4
Duzib168G0085 Durio zibethinus HOM05D007264 ORTHO05D008639 2.1e-09 66.6 144 38.9
Potri.001G243500 Populus trichocarpa HOM05D007264 ORTHO05D008639 2.8e-09 66.2 118 37.3
Aqoxy1G00887 Aquilegia oxysepala HOM05D007264 ORTHO05D008639 3.6e-09 65.9 131 40.5
DCAR_005951 Daucus carota HOM05D007264 ORTHO05D008639 3.6e-09 65.9 144 39.6
TAR623G1366 Trochodendron aralioides HOM05D007264 ORTHO05D008639 4.7e-09 65.5 148 40.5
AT2G29180 Arabidopsis thaliana HOM05D007264 ORTHO05D008639 6.2e-09 65.1 90 45.6
HanXRQChr01g0010441 Helianthus annuus HOM05D007264 ORTHO05D008639 8.0e-09 64.7 53 67.9
Os03g0271500 Oryza sativa ssp. japonica HOM05D016300 ORTHO05D008639 1.8e-08 63.5 78 50.0
CARHR122460 Cardamine hirsuta HOM05D007264 ORTHO05D008639 2.3e-08 63.2 157 36.3
Sp4g11990 Schrenkiella parvula HOM05D007264 ORTHO05D008639 2.3e-08 63.2 90 38.9
BcaC03g18293 Brassica carinata HOM05D007264 ORTHO05D008639 3.1e-08 62.8 48 62.5
C02p63690 Brassica napus HOM05D007264 ORTHO05D008639 3.1e-08 62.8 48 62.5
BolC2t12437H Brassica oleracea HOM05D007264 ORTHO05D008639 3.1e-08 62.8 48 62.5
Actinidia33776 Actinidia chinensis HOM05D007264 ORTHO05D008639 5.2e-08 62.0 130 36.2
ATR0559G356 Amborella trichopoda HOM05D007264 ORTHO05D008639 5.2e-08 62.0 82 42.7
Ah.15g098550 Amaranthus hybridus HOM05D007264 ORTHO05D008639 1.2e-07 60.8 125 40.8
BraA02t09285Z Brassica rapa HOM05D007264 ORTHO05D008639 1.2e-07 60.8 84 45.2
unitig_899.g15261 Utricularia gibba HOM05D007264 ORTHO05D008639 1.2e-07 60.8 74 44.6
Aa31LG5G7130 Aethionema arabicum HOM05D007264 ORTHO05D008639 2.0e-07 60.1 42 66.7
A02p43580 Brassica napus HOM05D007264 ORTHO05D008639 2.0e-07 60.1 85 44.7
CDE04G3075 Ceratophyllum demersum HOM05D007264 ORTHO05D008639 4.4e-07 58.9 136 36.8
Sabra16G0147800 Salix brachista HOM05D007264 ORTHO05D008639 1.3e-06 57.4 171 31.0
SGA_v2.0_scaffold111G31536 Striga asiatica HOM05D007264 ORTHO05D008639 1.7e-06 57.0 169 34.9
Zm00001eb299600 Zea mays HOM05D016300 ORTHO05D008639 1.7e-06 57.0 65 56.9
Zm00001eb299620 Zea mays HOM05D016300 ORTHO05D008639 1.7e-06 57.0 65 56.9
Zm00001eb440750 Zea mays HOM05D016300 ORTHO05D008639 1.7e-06 57.0 65 56.9
Manes.01G170100 Manihot esculenta HOM05D007264 ORTHO05D008639 8.3e-06 54.7 169 39.6


User provided reference genes

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