Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 0.0e+00 1117.1 581 100.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.5e-272 942.6 572 83.6
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 5.2e-270 934.1 572 83.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 5.2e-262 907.5 497 94.6
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 3.4e-261 904.8 572 81.6
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.5e-258 894.8 571 80.9
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 4.1e-251 871.3 577 79.0
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 7.1e-235 817.4 580 73.4
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 9.6e-232 807.0 598 71.4
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 6.0e-218 761.1 577 67.1
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.3e-216 755.4 585 65.6
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 6.2e-215 751.1 577 67.1
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 8.1e-215 750.7 577 67.1
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.1e-214 750.4 587 65.2
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.0e-209 733.8 586 63.3
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.3e-209 733.4 577 63.4
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.1e-207 726.1 577 64.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 2.1e-207 726.1 577 64.0
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.1e-206 723.8 594 62.6
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.8e-206 723.0 565 65.3
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.5e-205 718.4 580 63.6
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.7e-204 716.5 477 80.5
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 1.2e-202 710.3 578 63.3
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.1e-202 709.5 580 62.9
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 6.7e-201 704.5 381 94.8
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.1e-200 703.7 580 62.8
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.9e-200 703.0 582 63.7
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 1.6e-199 699.9 580 62.2
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 3.7e-199 698.7 583 62.6
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 1.1e-198 697.2 580 63.1
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.0e-198 694.1 580 61.6
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 2.6e-197 692.6 577 60.8
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.7e-196 689.9 580 61.6
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.5e-196 688.0 380 92.4
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 8.5e-196 687.6 579 60.4
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 8.5e-196 687.6 580 61.7
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.3e-193 679.5 578 60.9
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.0e-193 679.1 579 59.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 5.1e-193 678.3 595 60.8
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 1.5e-192 676.8 576 59.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.9e-192 676.4 580 59.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.5e-192 676.0 592 60.0
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 3.3e-192 675.6 579 59.8
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.7e-192 674.9 584 60.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.1e-190 669.1 579 59.6
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 4.1e-190 668.7 577 59.6
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.5e-189 666.8 579 59.2
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.0e-189 666.4 586 59.9
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 3.4e-189 665.6 580 60.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 7.7e-189 664.5 580 59.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 5.0e-188 661.8 580 59.3
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 8.5e-188 661.0 576 58.5
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.9e-187 659.8 579 57.9
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 3.2e-187 659.1 579 57.9
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 7.2e-187 657.9 579 57.9
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 7.2e-187 657.9 579 57.9
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 6.1e-186 654.8 580 57.6
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 6.1e-186 654.8 580 57.6
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.9e-185 652.1 581 58.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 6.3e-183 644.8 577 60.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 8.2e-183 644.4 579 57.9
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 4.1e-182 642.1 579 56.5
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 3.4e-181 639.0 577 57.5
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 8.5e-180 634.4 577 56.8
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 4.2e-179 632.1 576 56.6
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 1.6e-178 630.2 381 85.6
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 3.6e-178 629.0 581 55.4
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.0e-177 627.5 577 54.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 6.7e-177 624.8 577 54.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 8.5e-172 607.8 584 55.1
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.5e-172 607.8 581 57.0
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 1.6e-170 603.6 590 53.7
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.6e-170 602.4 584 54.1
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 3.6e-170 602.4 583 55.1
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.0e-170 601.3 582 54.1
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 4.4e-168 595.5 583 54.7
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 7.5e-168 594.7 592 53.7
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 3.1e-166 589.3 584 53.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 3.5e-165 585.9 577 54.2
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 3.5e-165 585.9 584 55.5
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 7.7e-165 584.7 581 56.5
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 5.0e-164 582.0 582 52.9
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 5.0e-164 582.0 605 51.1
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.1e-163 580.9 502 59.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 2.5e-163 579.7 623 50.9
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.0e-161 574.3 576 56.2
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.2e-160 570.9 576 54.0
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 1.5e-160 570.5 576 53.5
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 9.1e-158 561.2 587 53.7
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 7.2e-155 551.6 585 49.9
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.4e-152 542.7 581 50.3
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 7.0e-150 535.0 582 48.8
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 9.2e-150 534.6 394 69.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.4e-145 520.8 394 66.5
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 4.0e-145 519.2 386 68.7
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 2.6e-144 516.5 585 48.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 6.2e-138 495.4 278 90.6
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.1e-137 494.6 389 66.1
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.8e-137 491.9 391 66.2
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-132 478.0 577 44.7
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 1.9e-131 473.8 464 55.0
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.9e-131 473.8 581 46.8
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.5e-128 464.2 475 51.2
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.4e-126 457.6 262 88.5
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.9e-126 457.2 576 46.4
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.7e-124 450.7 394 58.6
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 8.9e-121 438.3 500 49.8
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 9.6e-115 418.3 262 82.4
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 3.8e-111 406.4 350 59.7
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 3.2e-110 403.3 578 40.7
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.1e-105 386.7 286 68.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.3e-103 381.3 348 60.9
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 9.3e-102 375.2 581 39.9
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.6e-98 364.4 206 89.8
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 9.3e-94 348.6 479 44.1
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 5.1e-92 342.8 451 41.7
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 2.1e-90 337.4 291 56.7
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-87 328.6 343 49.9
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 1.2e-72 278.5 345 42.3
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.9e-71 273.9 625 28.2
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 6.3e-66 256.1 589 29.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.4e-62 245.0 189 70.9
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 1.0e-60 238.8 218 57.8
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 5.9e-56 223.0 188 60.1
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 3.8e-55 220.3 557 27.3
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 9.1e-49 199.1 208 52.9
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.9e-48 196.4 129 78.3
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 8.8e-44 182.6 128 70.3
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 4.4e-43 180.3 244 43.9
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 4.1e-41 173.7 304 37.5
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.0e-39 169.1 412 31.3
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 6.6e-39 166.4 412 31.1
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 1.5e-38 165.2 108 74.1
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 4.1e-33 147.1 95 81.1
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 7.8e-32 142.9 83 89.2
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 7.3e-30 136.3 412 27.2
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 5.2e-28 130.2 110 58.2
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 7.0e-25 119.8 108 53.7
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 8.3e-18 96.3 110 50.0
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.5e-14 84.7 215 28.8
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-13 80.5 82 45.1
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.9e-12 76.3 54 68.5
Ca_06068_v3 Cicer arietinum L. HOM05D008273 ORTHO05D000110 3.2e-09 67.8 37 83.8
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.3e-07 62.4 77 46.8
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 1.7e-07 62.0 46 69.6
TPR.G3898 Trifolium pratense HOM05D004734 ORTHO05D411493 2.3e-07 61.6 38 84.2
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 1.9e-06 58.5 35 82.9


User provided reference genes

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