Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 3.8e-138 495.0 277 100.0
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-133 479.6 277 96.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.0e-130 470.3 277 95.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.8e-127 459.5 277 92.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 5.2e-127 458.0 277 92.1
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 6.8e-127 457.6 277 91.7
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 90.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 91.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 90.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 90.6
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.2e-125 452.6 277 89.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 89.2
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 89.2
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 89.2
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 89.2
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 89.5
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 89.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 88.8
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.2
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 88.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.8
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 87.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 87.4
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 87.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 87.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 87.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 88.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 86.3
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 87.4
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 6.6e-122 441.0 277 87.4
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 6.6e-122 441.0 301 84.4
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.9e-121 439.5 276 88.0
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.7
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 86.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 86.6
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.4
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.0
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 87.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 86.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 85.9
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 86.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 85.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 85.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-118 430.3 276 85.5
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 86.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 84.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.4e-118 428.7 261 89.7
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 83.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.3e-117 426.8 277 85.6
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.2e-117 426.0 278 84.2
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 82.7
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.9e-117 425.6 274 83.6
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 2.9e-117 425.6 283 84.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 86.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 4.9e-117 424.9 321 75.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.3e-117 424.1 320 77.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.1e-116 423.7 274 83.2
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 80.9
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 83.8
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 85.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 7.0e-116 421.0 277 81.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 5.0e-114 414.8 275 82.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 6.6e-114 414.5 277 84.5
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.6e-114 414.1 261 87.0
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.1e-113 413.7 261 87.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.5e-113 413.3 275 82.2
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.5e-113 413.3 275 82.2
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 9.5e-113 410.6 278 82.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.6e-112 408.7 274 83.6
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.2e-112 407.9 318 72.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 8.1e-112 407.5 280 81.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 8.1e-112 407.5 278 81.3
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.1e-111 405.6 275 82.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 7.5e-110 401.0 277 80.9
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.3e-109 400.2 270 83.3
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-109 399.4 273 81.0
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 8.3e-109 397.5 299 73.2
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.1e-108 397.1 318 68.9
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.1e-108 397.1 255 87.5
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.9e-108 396.4 269 78.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 3.2e-108 395.6 277 79.1
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.4e-108 394.8 278 80.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 9.2e-108 394.0 264 83.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-107 392.5 260 85.0
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.8e-107 391.0 278 77.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-105 386.3 277 78.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.3e-105 385.6 274 73.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.6e-104 383.3 258 82.6
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.6e-104 382.1 256 82.8
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.1e-103 380.6 275 78.9
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.1e-103 380.6 262 81.3
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.4e-103 380.2 282 77.3
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.8e-103 379.8 345 62.0
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-102 375.9 331 70.1
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 7.1e-100 367.9 230 87.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.3e-98 362.8 230 87.4
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-95 353.2 222 88.7
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.2e-93 346.3 222 86.9
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.2e-91 340.5 277 64.3
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-91 338.6 250 78.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-91 338.6 250 78.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.9e-90 335.5 268 72.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.1e-88 329.7 277 65.3
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-88 328.9 314 65.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.8e-88 328.6 274 66.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.1e-87 325.9 224 82.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 3.4e-86 322.4 281 65.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-85 319.3 274 69.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 3.8e-85 318.9 283 66.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-84 315.8 274 69.3
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-71 273.5 258 60.5
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.5e-70 268.9 278 58.3
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.9e-69 266.2 187 80.2
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-65 254.2 274 52.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.5e-60 236.5 145 93.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 3.0e-58 229.6 155 74.2
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-58 229.2 181 77.3
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.8e-55 220.3 138 82.6
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.4e-54 216.1 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.7e-51 206.5 132 80.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.2e-45 186.8 300 44.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.2e-45 186.8 97 99.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.6e-43 179.5 106 86.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 7.4e-41 171.8 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.6e-35 154.1 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.5e-33 147.5 152 55.9
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.3e-29 134.4 80 83.8
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.9e-29 133.3 80 81.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.5e-29 132.1 74 87.8
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 6.5e-29 132.1 74 87.8
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 5.4e-23 112.5 264 36.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.5e-20 103.6 157 45.9
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.0e-18 98.2 149 47.7
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 4.0e-18 96.3 73 76.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 5.2e-18 95.9 172 39.0
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-18 95.5 102 55.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 8.8e-18 95.1 65 76.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-17 94.4 147 40.1
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 9.8e-17 91.7 157 41.4
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.8e-16 90.1 71 81.7
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.3e-16 88.6 158 39.9
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.2e-15 85.1 71 74.6
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.3e-13 81.3 181 32.6
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.8e-13 79.7 45 88.9
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-12 78.2 44 86.4
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.2e-11 74.7 46 73.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 163 38.0
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.6e-11 74.3 43 83.7
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.6e-11 73.2 151 41.1
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.3e-10 70.5 240 33.3
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-08 64.3 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.4e-07 59.3 60 56.7


User provided reference genes

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