Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6786 Trifolium pratense HOM05D001012 ORTHO05D006553 2.4e-45 185.3 103 100.0
Medtr8g088230 Medicago truncatula HOM05D001012 ORTHO05D006553 4.3e-34 147.9 85 88.2
Psat7g065120 Pisum sativum HOM05D001012 ORTHO05D006553 1.1e-32 143.3 85 85.9
Ca_17859_v3 Cicer arietinum L. HOM05D001012 ORTHO05D006553 9.2e-29 130.2 86 80.2
Glyma.05G165400 Glycine max HOM05D001012 ORTHO05D006553 7.6e-23 110.5 87 72.4
Glyma.08G122800 Glycine max HOM05D001012 ORTHO05D006553 1.7e-22 109.4 86 72.1
VMungo0251G0808 Vigna mungo HOM05D001012 ORTHO05D006553 2.9e-22 108.6 86 73.3
Phvul.002G245600 Phaseolus vulgaris HOM05D001012 ORTHO05D006553 3.8e-22 108.2 100 69.0
Lalb_Chr13g0295511 Lupinus albus HOM05D001012 ORTHO05D006553 1.1e-21 106.7 82 73.2
Lalb_Chr07g0186031 Lupinus albus HOM05D001012 ORTHO05D006553 1.4e-21 106.3 80 72.5
Lj4g0004868 Lotus japonicus HOM05D001012 ORTHO05D006553 4.2e-21 104.8 80 72.5
Lalb_Chr12g0204701 Lupinus albus HOM05D001012 ORTHO05D006553 9.2e-21 103.6 92 65.2
arahy.Tifrunner.gnm1.ann1.G1SBH4 Arachis hypogaea HOM05D001012 ORTHO05D006553 2.3e-19 99.0 83 68.7
arahy.Tifrunner.gnm1.ann1.LF7IV9 Arachis hypogaea HOM05D001012 ORTHO05D006553 2.3e-19 99.0 83 68.7
Cfa014796 Carpinus fangiana HOM05D001012 ORTHO05D006553 9.6e-18 93.6 81 60.5
BraA04t16560Z Brassica rapa HOM05D001012 ORTHO05D006553 3.1e-16 88.6 70 61.4
CANSAT78G1811 Cannabis sativa HOM05D001012 ORTHO05D006553 5.3e-16 87.8 74 64.9
BcaC02g09422 Brassica carinata HOM05D001012 ORTHO05D006553 6.9e-16 87.4 66 63.6
C04p42440 Brassica napus HOM05D001012 ORTHO05D006553 6.9e-16 87.4 66 63.6
BolC4t25823H Brassica oleracea HOM05D001012 ORTHO05D006553 6.9e-16 87.4 66 63.6
A05p16540 Brassica napus HOM05D001012 ORTHO05D006553 1.5e-15 86.3 74 56.8
BraA05t20558Z Brassica rapa HOM05D001012 ORTHO05D006553 1.5e-15 86.3 74 56.8
BcaC08g44307 Brassica carinata HOM05D001012 ORTHO05D006553 2.0e-15 85.9 74 56.8
C06p17310 Brassica napus HOM05D001012 ORTHO05D006553 2.0e-15 85.9 74 56.8
BolC6t36927H Brassica oleracea HOM05D001012 ORTHO05D006553 2.0e-15 85.9 74 56.8
CiPaw.01G176800 Carya illinoinensis HOM05D001012 ORTHO05D006553 2.0e-15 85.9 73 58.9
Haze_11480 Corylus avellana HOM05D001012 ORTHO05D006553 3.4e-15 85.1 59 74.6
TWI53G2025 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 3.4e-15 85.1 67 64.2
A04p08680 Brassica napus HOM05D001012 ORTHO05D006553 4.4e-15 84.7 66 62.1
AL9U10100 Arabidopsis lyrata HOM05D001012 ORTHO05D006553 5.8e-15 84.3 71 57.7
BcaB03g16098 Brassica carinata HOM05D001012 ORTHO05D006553 5.8e-15 84.3 66 62.1
A08p06800 Brassica napus HOM05D001012 ORTHO05D006553 5.8e-15 84.3 66 62.1
BraA08t32698Z Brassica rapa HOM05D001012 ORTHO05D006553 5.8e-15 84.3 66 62.1
CARHR219090 Cardamine hirsuta HOM05D001012 ORTHO05D006553 7.6e-15 84.0 64 62.5
Sp7g11010 Schrenkiella parvula HOM05D001012 ORTHO05D006553 7.6e-15 84.0 64 62.5
Aa31LG9G4190 Aethionema arabicum HOM05D001012 ORTHO05D006553 9.9e-15 83.6 70 58.6
AT4G13450 Arabidopsis thaliana HOM05D001012 ORTHO05D006553 9.9e-15 83.6 64 60.9
Thhalv10027024m.g Eutrema salsugineum HOM05D001012 ORTHO05D006553 9.9e-15 83.6 64 62.5
QL06p021551 Quercus lobata HOM05D001012 ORTHO05D006553 9.9e-15 83.6 74 60.8
BcaB04g17687 Brassica carinata HOM05D001012 ORTHO05D006553 1.3e-14 83.2 66 60.6
Gohir.A09G231000 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.2e-14 82.4 71 60.6
ClCG05G003930 Citrullus lanatus HOM05D001012 ORTHO05D006553 2.9e-14 82.0 63 66.7
Gohir.D09G232100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.9e-14 82.0 66 63.6
Gorai.006G254900 Gossypium raimondii HOM05D001012 ORTHO05D006553 2.9e-14 82.0 66 63.6
MD11G1081000 Malus domestica HOM05D001012 ORTHO05D006553 3.8e-14 81.6 69 60.9
Sed0004779 Sechium edule HOM05D001012 ORTHO05D006553 4.9e-14 81.3 63 63.5
Carub.0007s2910 Capsella rubella HOM05D001012 ORTHO05D006553 6.4e-14 80.9 72 58.3
Ciclev10006525m.g Citrus clementina HOM05D001012 ORTHO05D006553 6.4e-14 80.9 59 67.8
Duzib151G0254 Durio zibethinus HOM05D001012 ORTHO05D006553 6.4e-14 80.9 65 64.6
Duzib212G1028 Durio zibethinus HOM05D001012 ORTHO05D006553 8.4e-14 80.5 66 63.6
MELO3C006368.2 Cucumis melo HOM05D001012 ORTHO05D006553 1.1e-13 80.1 62 66.1
CsaV3_3G011600 Cucumis sativus L. HOM05D001012 ORTHO05D006553 1.4e-13 79.7 62 66.1
Prupe.6G061400 Prunus persica HOM05D001012 ORTHO05D006553 1.4e-13 79.7 69 58.0
Thecc.04G266600 Theobroma cacao HOM05D001012 ORTHO05D006553 1.4e-13 79.7 66 62.1
FAN22G2107 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.9e-13 79.3 69 60.9
PSO764G0162 Papaver somniferum HOM05D001012 ORTHO05D006553 2.4e-13 79.0 61 67.2
PSO832G0948 Papaver somniferum HOM05D001012 ORTHO05D006553 2.4e-13 79.0 61 67.2
COL.COLO4_15982 Corchorus olitorius HOM05D001012 ORTHO05D006553 5.4e-13 77.8 65 61.5
Duzib052G0032 Durio zibethinus HOM05D001012 ORTHO05D006553 5.4e-13 77.8 66 62.1
FAN12G4090 Fragaria x ananassa HOM05D001012 ORTHO05D006553 5.4e-13 77.8 69 62.3
FvH4_4g05010 Fragaria vesca HOM05D001012 ORTHO05D006553 9.3e-13 77.0 63 63.5
Nitab4.5_0005154g0070 Nicotiana tabacum HOM05D001012 ORTHO05D006553 1.6e-12 76.3 66 65.2
GSVIVG01027936001 Vitis vinifera HOM05D001012 ORTHO05D006553 1.6e-12 76.3 67 62.7
Eucgr.H02904 Eucalyptus grandis HOM05D001012 ORTHO05D006553 2.1e-12 75.9 81 54.3
Cpa.g.sc59.15 Carica papaya HOM05D001012 ORTHO05D006553 2.7e-12 75.5 66 62.1
FAN17G2151 Fragaria x ananassa HOM05D001012 ORTHO05D006553 2.7e-12 75.5 63 61.9
PGR031G3217 Punica granatum HOM05D001012 ORTHO05D006553 4.6e-12 74.7 64 62.5
PGR118G0004 Punica granatum HOM05D001012 ORTHO05D006553 4.6e-12 74.7 64 62.5
TAR633G0662 Trochodendron aralioides HOM05D001012 ORTHO05D006553 4.6e-12 74.7 74 55.4
MD16G1227600 Malus domestica HOM05D001012 ORTHO05D006553 6.0e-12 74.3 81 55.6
Nitab4.5_0001041g0100 Nicotiana tabacum HOM05D001012 ORTHO05D006553 1.0e-11 73.6 66 63.6
RcHm_v2.0_Chr4g0395821 Rosa chinensis HOM05D001012 ORTHO05D006553 1.3e-11 73.2 77 55.8
Prupe.1G050300 Prunus persica HOM05D001012 ORTHO05D006553 1.7e-11 72.8 70 57.1
Rhsim02G0163200 Rhododendron simsii HOM05D000001 ORTHO05D013373 2.3e-11 72.4 63 63.5
CAN.G812.18 Capsicum annuum HOM05D001012 ORTHO05D006553 3.9e-11 71.6 74 55.4
Peaxi162Scf00531g00325 Petunia axillaris HOM05D001012 ORTHO05D006553 5.1e-11 71.2 77 55.8
CSS0001601 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 6.6e-11 70.9 64 62.5
CSS0016929 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 6.6e-11 70.9 64 62.5
Potri.010G064800 Populus trichocarpa HOM05D001012 ORTHO05D006553 6.6e-11 70.9 73 58.9
Atru.chr4.1898 Acer truncatum HOM05D001012 ORTHO05D006553 1.5e-10 69.7 62 58.1
PGSC0003DMG400001554 Solanum tuberosum HOM05D001012 ORTHO05D006553 1.9e-10 69.3 57 61.4
Dinv27122 Davidia involucrata HOM05D001012 ORTHO05D006553 2.5e-10 68.9 55 63.6
Dinv29795 Davidia involucrata HOM05D001012 ORTHO05D006553 2.5e-10 68.9 67 56.7
Migut.G00561 Erythranthe guttata HOM05D001012 ORTHO05D006553 2.5e-10 68.9 59 61.0
MD13G1223300 Malus domestica HOM05D001012 ORTHO05D006553 2.5e-10 68.9 65 60.0
Lj6A637T67 Lonicera japonica HOM05D001012 ORTHO05D006553 4.3e-10 68.2 67 58.2
Oeu047121.1 Olea europaea HOM05D001012 ORTHO05D006553 4.3e-10 68.2 64 53.1
Nn3g19798 Nelumbo nucifera HOM05D001012 ORTHO05D006553 5.6e-10 67.8 75 52.0
Rhsim04G0171000 Rhododendron simsii HOM05D001012 ORTHO05D006553 5.6e-10 67.8 63 63.5
RcHm_v2.0_Chr5g0068561 Rosa chinensis HOM05D001012 ORTHO05D006553 7.3e-10 67.4 85 48.2
Solyc09g090850.3 Solanum lycopersicum HOM05D001012 ORTHO05D006553 7.3e-10 67.4 56 60.7
Sopen09g033810 Solanum pennellii HOM05D001012 ORTHO05D006553 7.3e-10 67.4 56 60.7
Manes.03G157600 Manihot esculenta HOM05D001012 ORTHO05D006553 9.6e-10 67.0 73 54.8
EL10Ac3g06679 Beta vulgaris HOM05D001012 ORTHO05D006553 1.3e-09 66.6 78 50.0
Cc03_g06470 Coffea canephora HOM05D001012 ORTHO05D006553 1.6e-09 66.2 65 58.5
Gohir.A02G043500 Gossypium hirsutum HOM05D001012 ORTHO05D006553 1.6e-09 66.2 61 55.7
MSTRG.24651 Avicennia marina HOM05D001012 ORTHO05D006553 2.8e-09 65.5 68 47.1
Gohir.D02G049100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.8e-09 65.5 61 54.1
Nn1g02990 Nelumbo nucifera HOM05D001012 ORTHO05D006553 6.2e-09 64.3 67 52.2
FvH4_3g38130 Fragaria vesca HOM05D001012 ORTHO05D006553 8.1e-09 63.9 71 50.7
AUR62002870 Chenopodium quinoa HOM05D001012 ORTHO05D006553 1.1e-08 63.5 55 58.2
AUR62035225 Chenopodium quinoa HOM05D001012 ORTHO05D006553 1.1e-08 63.5 56 58.9
Oeu020134.1 Olea europaea HOM05D001012 ORTHO05D006553 1.1e-08 63.5 70 51.4
FAN11G1796 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.4e-08 63.2 68 52.9
CSS0048740 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 2.4e-08 62.4 52 65.4
FAN16G2551 Fragaria x ananassa HOM05D001012 ORTHO05D006553 2.4e-08 62.4 71 49.3
FAN25G0383 Fragaria x ananassa HOM05D001012 ORTHO05D006553 2.4e-08 62.4 71 49.3
Nitab4.5_0002613g0090 Nicotiana tabacum HOM05D001012 ORTHO05D006553 2.4e-08 62.4 60 60.0
PGR004G0071 Punica granatum HOM05D001012 ORTHO05D006553 2.4e-08 62.4 65 55.4
Atru.chr12.1110 Acer truncatum HOM05D001012 ORTHO05D006553 6.9e-08 60.8 72 47.2
THA.LOC104804645 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 6.9e-08 60.8 78 46.2
Gorai.005G054300 Gossypium raimondii HOM05D001012 ORTHO05D006553 9.0e-08 60.5 57 52.6
BcaC07g37362 Brassica carinata HOM05D001012 ORTHO05D006553 1.2e-07 60.1 60 53.3
Lsat_1_v5_gn_9_39921 Lactuca sativa HOM05D001012 ORTHO05D006553 1.2e-07 60.1 83 38.6
ECA247G2191 Erigeron canadensis HOM05D001012 ORTHO05D006553 1.5e-07 59.7 85 42.4
SalBow3G0364 Salvia bowleyana HOM05D001012 ORTHO05D006553 1.5e-07 59.7 55 56.4
SalBow3G3922 Salvia bowleyana HOM05D001012 ORTHO05D006553 1.5e-07 59.7 55 56.4
FAN21G0806 Fragaria x ananassa HOM05D001012 ORTHO05D006553 5.8e-07 57.8 71 46.5
ATR0787G200 Amborella trichopoda HOM05D001012 ORTHO05D006553 9.9e-07 57.0 50 52.0
BolC8t47662H Brassica oleracea HOM05D001012 ORTHO05D006553 2.2e-06 55.8 47 63.8
MBI10_g16813_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D006553 2.2e-06 55.8 56 55.4
HPP92_026009 Vanilla planifolia HOM05D001012 ORTHO05D006553 2.2e-06 55.8 35 74.3
Ah.04g153780 Amaranthus hybridus HOM05D001012 ORTHO05D006553 3.8e-06 55.1 50 58.0
C08p08090 Brassica napus HOM05D001012 ORTHO05D006553 4.9e-06 54.7 47 61.7
Peaxi162Scf00017g03287 Petunia axillaris HOM05D001012 ORTHO05D002597 6.4e-06 54.3 68 45.6


User provided reference genes

Program Settings