Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.0e-229 799.7 393 100.0
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 2.3e-205 718.8 388 89.4
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 7.5e-172 607.4 379 76.5
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 1.2e-156 557.0 375 71.2
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 3.0e-152 542.3 393 68.7
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 4.3e-151 538.5 380 70.8
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 4.7e-150 535.0 381 69.8
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 2.3e-136 489.6 375 62.7
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.3e-134 483.8 376 66.2
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 1.1e-133 480.7 374 60.4
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 9.9e-132 474.2 371 62.0
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 4.9e-131 471.9 371 62.0
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 1.9e-130 469.9 374 59.6
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 2.4e-130 469.5 376 60.1
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 7.1e-130 468.0 377 59.4
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 9.3e-130 467.6 374 59.6
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 1.2e-129 467.2 373 60.1
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 1.6e-129 466.8 377 59.9
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 2.1e-129 466.5 394 57.4
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 2.7e-129 466.1 374 59.1
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 4.6e-129 465.3 370 64.9
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 7.9e-129 464.5 375 59.2
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 1.0e-128 464.2 375 58.9
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 2.3e-128 463.0 378 58.7
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 3.9e-128 462.2 378 58.7
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 5.1e-128 461.8 375 60.3
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 5.1e-128 461.8 378 58.7
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 6.7e-128 461.5 378 59.8
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 6.7e-128 461.5 378 59.5
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 8.7e-128 461.1 375 58.9
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 1.9e-127 459.9 375 58.1
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 3.3e-127 459.1 398 57.0
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 4.3e-127 458.8 377 58.9
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 7.4e-127 458.0 379 57.0
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.3e-126 457.2 375 57.6
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.7e-126 455.7 376 58.0
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 4.8e-126 455.3 375 60.5
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 4.8e-126 455.3 376 58.2
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 1.4e-125 453.8 372 58.1
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 1.4e-125 453.8 374 59.6
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 1.8e-125 453.4 396 55.8
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 5.3e-125 451.8 383 58.2
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 5.3e-125 451.8 375 57.1
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 9.0e-125 451.1 377 59.4
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 9.0e-125 451.1 373 57.9
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 2.0e-124 449.9 378 59.5
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 4.5e-124 448.7 375 56.0
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 1.0e-123 447.6 372 57.8
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 1.0e-123 447.6 370 57.8
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 2.9e-123 446.0 372 57.0
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 1.1e-122 444.1 375 56.8
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 3.2e-122 442.6 372 57.3
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 5.5e-122 441.8 373 57.4
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 7.1e-122 441.4 372 58.3
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 9.3e-122 441.0 390 55.9
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.6e-121 440.3 372 56.2
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 1.6e-121 440.3 373 57.1
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 4.6e-121 438.7 373 56.6
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 8.2e-118 427.9 380 56.8
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 8.2e-118 427.9 373 57.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 9.0e-117 424.5 366 56.3
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-116 424.1 357 57.7
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 1.3e-115 420.6 371 56.1
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 1.3e-115 420.6 396 53.8
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.7e-115 420.2 375 54.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 2.2e-115 419.9 369 55.8
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 2.9e-115 419.5 373 56.3
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 5.0e-115 418.7 366 55.7
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 8.5e-115 417.9 371 54.4
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 9.3e-114 414.5 371 54.4
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 2.7e-113 412.9 357 56.3
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 6.7e-112 408.3 376 54.3
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 1.1e-111 407.5 350 55.4
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 2.5e-111 406.4 358 55.6
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 2.2e-110 403.3 376 54.5
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 1.0e-104 384.4 374 51.3
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.3e-102 377.5 366 52.2
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 3.4e-100 369.4 382 51.0
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 1.9e-90 337.0 252 64.3
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 2.7e-89 333.2 384 47.9
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 4.7e-89 332.4 383 44.9
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 1.7e-83 313.9 315 52.4
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 1.9e-82 310.5 393 43.5
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.3e-75 287.7 355 46.5
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 1.2e-73 281.2 378 41.8
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 3.4e-71 273.1 145 88.3
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 2.7e-68 263.5 255 53.7
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 1.2e-65 254.6 268 56.3
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 1.6e-65 254.2 296 47.3
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 3.6e-65 253.1 373 37.3
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 8.0e-65 251.9 366 38.3
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 3.4e-63 246.5 184 63.0
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 3.2e-61 240.0 140 83.6
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 9.2e-61 238.4 318 40.3
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.7e-60 236.9 223 51.6
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 4.1e-53 213.0 208 52.9
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 4.6e-52 209.5 208 49.5
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 7.8e-52 208.8 145 66.9
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 1.9e-50 204.1 422 32.0
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 1.6e-49 201.1 248 45.2
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 1.5e-47 194.5 179 53.1
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 1.3e-46 191.4 186 53.2
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 2.2e-46 190.7 187 50.3
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.1e-44 184.1 210 47.1
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 2.1e-44 184.1 210 47.1
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 1.9e-42 177.6 230 41.7
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 3.3e-42 176.8 182 52.2
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 5.2e-40 169.5 158 53.2
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 2.7e-36 157.1 123 57.7
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 1.1e-34 151.8 143 53.8
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 2.6e-31 140.6 148 50.0
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 9.9e-31 138.7 178 41.6
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.9e-30 137.1 104 63.5
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 2.3e-27 127.5 78 76.9
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 4.3e-26 123.2 98 62.2
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 9.9e-23 112.1 80 62.5
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 9.3e-21 105.5 107 44.9
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 1.3e-19 101.7 234 27.8
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 2.2e-14 84.3 363 24.5
Psat2g000040 Pisum sativum HOM05D000001 ORTHO05D025617 2.4e-13 80.9 49 77.6
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.0e-11 73.9 70 52.9
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 9.6e-10 68.9 181 33.7
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 1.3e-09 68.6 115 38.3
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 3.1e-08 63.9 61 59.0
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 1.7e-06 58.2 160 33.8
arahy.Tifrunner.gnm1.ann1.PN7KIB Arachis hypogaea HOM05D006665 ORTHO05D018494 6.5e-06 56.2 33 66.7


User provided reference genes

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