Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 9.6e-49 196.4 94 100.0
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 7.4e-25 117.1 62 85.5
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 9.6e-25 116.7 62 85.5
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.6e-24 115.9 62 85.5
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 3.7e-24 114.8 62 83.9
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 8.2e-24 113.6 62 82.3
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 8.2e-24 113.6 62 83.9
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 1.8e-23 112.5 62 82.3
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 1.8e-23 112.5 62 82.3
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 3.1e-23 111.7 62 80.6
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 5.3e-23 110.9 62 79.0
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 5.3e-23 110.9 62 79.0
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 2.6e-22 108.6 63 82.5
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 2.6e-22 108.6 62 80.6
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.4e-22 108.2 63 79.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 4.5e-22 107.8 63 79.4
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 4.5e-22 107.8 62 82.3
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 4.5e-22 107.8 93 61.3
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 7.6e-22 107.1 62 82.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.0e-21 106.7 62 79.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.0e-21 106.7 62 79.0
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.0e-21 106.7 62 79.0
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.0e-21 106.7 58 84.5
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.3e-21 106.3 62 77.4
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 1.7e-21 105.9 62 79.0
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.2e-21 105.5 62 77.4
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 2.2e-21 105.5 64 78.1
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 2.9e-21 105.1 63 76.2
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.8e-21 104.8 62 77.4
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.8e-21 104.8 64 78.1
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.9e-21 104.4 63 76.2
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 6.5e-21 104.0 62 77.4
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 75.8
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 79.0
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 79.0
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 79.0
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 79.0
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 8.4e-21 103.6 62 79.0
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 1.1e-20 103.2 62 75.8
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.1e-20 103.2 62 75.8
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.4e-20 102.8 63 77.8
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.4e-20 102.8 62 75.8
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.9e-20 102.4 62 72.6
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.9e-20 102.4 62 75.8
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.9e-20 102.4 62 71.0
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 3.2e-20 101.7 62 74.2
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 4.2e-20 101.3 63 74.6
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 5.5e-20 100.9 62 74.2
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 5.5e-20 100.9 62 74.2
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 5.5e-20 100.9 63 76.2
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 5.5e-20 100.9 64 73.4
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 7.1e-20 100.5 62 74.2
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 7.1e-20 100.5 64 75.0
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 7.1e-20 100.5 62 74.2
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 7.1e-20 100.5 62 72.6
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 7.1e-20 100.5 61 75.4
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 7.1e-20 100.5 62 72.6
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 9.3e-20 100.1 62 72.6
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 9.3e-20 100.1 62 72.6
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 9.3e-20 100.1 64 73.4
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 9.3e-20 100.1 62 72.6
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 9.3e-20 100.1 64 71.9
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 9.3e-20 100.1 64 71.9
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 9.3e-20 100.1 64 71.9
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.2e-19 99.8 62 72.6
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 1.2e-19 99.8 62 72.6
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-19 99.8 64 75.0
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-19 99.8 64 75.0
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.2e-19 99.8 64 75.0
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.2e-19 99.8 62 74.2
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-19 99.4 64 73.4
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-19 99.4 64 73.4
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-19 99.4 64 73.4
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 1.6e-19 99.4 62 72.6
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 2.1e-19 99.0 62 74.2
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 2.1e-19 99.0 62 72.6
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 2.1e-19 99.0 62 69.4
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 2.1e-19 99.0 62 71.0
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 71.0
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 71.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 75.8
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 71.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 2.7e-19 98.6 63 71.4
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 72.6
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 72.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 2.7e-19 98.6 62 71.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 3.5e-19 98.2 63 77.8
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 4.6e-19 97.8 62 69.4
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 4.6e-19 97.8 61 72.1
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 4.6e-19 97.8 62 74.2
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 7.9e-19 97.1 62 71.0
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 7.9e-19 97.1 63 71.4
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 1.0e-18 96.7 61 73.8
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.8e-18 95.9 62 74.2
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.3e-18 95.5 64 70.3
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 2.3e-18 95.5 62 67.7
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.9e-18 94.7 64 70.3
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.9e-18 94.7 64 70.3
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.9e-18 94.7 64 70.3
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.5e-17 92.8 64 73.4
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.5e-17 92.8 64 67.2
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 3.3e-17 91.7 62 66.1
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 5.7e-17 90.9 62 66.1
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 6.3e-16 87.4 62 66.1
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 1.4e-15 86.3 55 70.9
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 6.9e-15 84.0 63 63.5
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 9.0e-15 83.6 61 67.2
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 2.2e-13 79.0 63 60.3
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 3.8e-13 78.2 47 68.1
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 6.5e-13 77.4 58 60.3
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 8.5e-13 77.0 55 67.3
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.1e-12 76.6 55 61.8
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 1.9e-12 75.9 53 56.6
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 2.7e-11 72.0 62 56.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.1e-09 66.6 50 64.0
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 5.7e-09 64.3 60 55.0
TPR.G6988 Trifolium pratense HOM05D006197 ORTHO05D007718 6.3e-08 60.8 30 96.7
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 9.1e-07 57.0 29 75.9
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 5.9e-06 54.3 54 50.0
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.7e-06 53.9 54 48.1


User provided reference genes

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