Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 5.0e-145 518.5 427 100.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 8.3e-116 421.4 429 80.9
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.2e-111 407.5 429 87.9
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.7e-106 389.8 385 88.3
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.2e-93 347.8 387 81.9
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.9e-92 342.4 406 76.4
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.4e-91 340.9 395 78.7
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.9e-91 340.5 386 83.7
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.6e-89 332.0 386 74.6
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 5.6e-88 328.9 392 74.5
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.1e-87 327.0 415 74.0
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 3.6e-87 326.2 407 75.4
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 8.1e-87 325.1 384 75.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.4e-86 324.3 410 71.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.4e-85 319.7 431 67.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 9.9e-85 318.2 384 77.3
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 8.4e-84 315.1 428 67.3
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 3.5e-82 309.7 438 64.4
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 5.1e-81 305.8 384 71.4
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.6e-81 305.4 389 73.8
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.5e-80 303.5 406 70.4
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-79 301.2 414 67.6
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.6e-79 300.8 436 66.7
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 8.1e-79 298.5 388 72.2
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.1e-78 298.1 386 72.8
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.4e-78 297.0 322 80.7
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 5.3e-78 295.8 383 70.5
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.6e-77 293.5 382 69.9
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 4.5e-77 292.7 369 71.5
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 9.9e-77 291.6 405 70.1
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.9e-76 290.0 381 71.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 4.9e-76 289.3 387 68.7
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.9e-76 289.3 381 71.7
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.4e-76 288.9 382 71.5
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-75 288.1 408 69.9
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.1e-75 288.1 383 73.9
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.4e-75 287.7 380 71.1
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.4e-75 287.7 380 71.1
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.4e-75 287.7 381 71.1
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.9e-75 287.3 383 71.0
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.2e-75 286.6 383 71.0
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.4e-75 285.8 385 71.7
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 5.4e-75 285.8 408 70.1
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 2.1e-74 283.9 395 69.6
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.7e-74 283.5 382 66.5
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.0e-74 282.3 392 71.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 6.0e-74 282.3 391 70.8
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 7.9e-74 282.0 384 71.4
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.8e-73 280.8 405 67.2
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 3.0e-73 280.0 389 73.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 8.7e-73 278.5 382 74.3
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.1e-72 278.1 381 74.0
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.5e-72 277.7 408 68.1
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.9e-72 277.3 411 65.9
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 4.3e-72 276.2 381 74.0
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 1.3e-71 274.6 382 69.9
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.8e-71 273.5 381 74.0
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 6.2e-71 272.3 403 68.0
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 8.1e-71 271.9 413 70.9
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.4e-70 271.2 393 63.9
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 9.0e-70 268.5 374 72.2
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.2e-69 268.1 387 68.5
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 2.0e-69 267.3 418 62.7
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 2.0e-69 267.3 382 73.0
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.6e-69 266.9 369 74.0
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.4e-69 266.5 387 68.2
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 7.6e-69 265.4 385 74.5
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 7.6e-69 265.4 418 61.0
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.3e-68 264.6 438 59.4
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.2e-68 263.8 406 67.5
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.2e-68 263.8 408 70.1
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.2e-68 263.8 386 71.8
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.4e-68 262.3 386 67.1
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.4e-67 261.2 391 67.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-67 260.8 435 62.1
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.9e-67 260.8 435 60.5
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.5e-67 260.4 387 69.5
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 4.2e-67 259.6 385 67.3
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.5e-67 259.2 355 69.0
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.1e-67 258.8 387 65.6
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 6.0e-66 255.8 388 64.7
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.3e-65 254.6 322 70.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 1.3e-65 254.6 320 71.9
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.3e-65 254.6 386 65.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.3e-65 254.6 386 67.4
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.9e-65 253.1 412 68.9
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-64 251.1 401 64.6
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 3.3e-64 250.0 348 69.3
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 7.4e-64 248.8 392 64.0
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.6e-63 247.7 405 64.4
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 5.3e-62 242.7 401 68.1
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 5.3e-62 242.7 392 63.3
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.0e-60 238.4 393 65.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.7e-60 237.7 389 66.8
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.2e-60 237.3 393 59.5
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.9e-60 236.9 193 62.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.4e-59 234.6 352 66.5
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 5.5e-59 232.6 385 63.6
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 7.1e-59 232.3 476 55.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 3.5e-58 229.9 386 66.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-57 228.0 387 64.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.3e-57 228.0 404 59.4
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.5e-56 223.8 390 62.8
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 7.4e-56 222.2 404 64.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.3e-55 221.5 364 63.5
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 2.2e-55 220.7 390 65.9
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.8e-55 219.5 393 61.8
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.1e-54 218.4 323 68.4
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.0e-53 214.2 403 59.8
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.0e-53 214.2 401 59.4
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.4e-53 213.4 406 59.4
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 8.5e-52 208.8 395 60.0
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 8.5e-52 208.8 395 60.0
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 8.5e-52 208.8 395 60.0
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.9e-51 207.6 396 60.1
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.9e-51 207.6 396 60.1
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.5e-51 207.2 389 59.6
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.6e-50 203.4 390 64.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 4.6e-50 203.0 285 84.2
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.0e-49 200.3 387 65.6
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.0e-49 200.3 393 57.5
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.9e-49 199.9 449 60.6
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.1e-48 198.4 379 60.9
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.5e-48 198.0 396 41.9
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-47 194.9 428 60.0
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.3e-47 194.9 428 60.0
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.4e-46 190.7 415 56.6
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.4e-45 186.8 384 63.8
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.7e-44 184.5 330 62.7
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 5.0e-44 183.0 389 64.5
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-43 181.4 388 64.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.4e-43 181.4 388 64.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.4e-43 181.4 388 64.9
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.6e-42 177.9 381 65.1
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.1e-40 171.8 387 40.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 4.4e-40 169.9 386 62.4
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-39 168.3 329 65.0
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.7e-37 159.1 373 63.5
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-36 158.3 227 46.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.8e-36 156.8 341 53.7
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 6.5e-36 156.0 400 56.2
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-34 151.8 330 63.3
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.6e-34 150.2 193 46.1
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.8e-33 147.9 265 67.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.8e-33 147.9 407 50.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.5e-32 144.8 400 55.0
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.0e-32 144.4 130 58.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 2.6e-32 144.1 169 47.9
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 4.8e-31 139.8 401 56.4
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.2e-27 125.9 397 48.9
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 3.0e-25 120.6 278 70.1
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 6.8e-25 119.4 110 68.2
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.1e-22 112.1 246 70.3
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.4e-22 109.8 405 53.3
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.2e-21 108.6 213 38.0
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 1.0e-20 105.5 235 80.9
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.7e-20 104.8 412 42.2
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 3.6e-18 97.1 120 48.3
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 6.3e-15 86.3 90 56.7
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 4.1e-14 83.6 102 47.1
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 9.1e-14 82.4 202 30.2
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.9e-13 79.7 93 51.6
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.2e-10 72.0 172 36.6
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.4e-09 68.6 102 36.3
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 8.3e-07 59.3 89 43.8


User provided reference genes

Program Settings