Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 7.9e-49 196.8 101 100.0
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 6.5e-35 150.6 102 78.4
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.2e-33 146.4 101 74.3
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.6e-33 144.4 101 74.3
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 8.5e-27 123.6 101 63.4
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.8e-24 115.9 101 60.4
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 3.9e-24 114.8 101 61.4
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 6.7e-24 114.0 101 58.4
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.5e-23 112.8 101 61.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.7e-22 109.4 101 58.4
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.1e-21 106.7 100 59.0
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 9.1e-21 103.6 95 58.9
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.5e-20 102.8 101 59.4
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.0e-20 102.4 101 59.4
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 5.9e-20 100.9 102 53.9
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.9e-19 98.6 102 51.0
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 2.9e-19 98.6 102 55.9
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.9e-19 98.6 97 54.6
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.9e-18 95.9 102 53.9
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 3.2e-18 95.1 98 51.0
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 2.1e-17 92.4 101 50.5
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.7e-17 92.0 103 52.4
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.7e-17 91.3 101 53.5
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 7.9e-17 90.5 101 53.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.0e-16 90.1 101 52.5
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.0e-16 90.1 101 52.5
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.4e-16 89.7 93 55.9
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 1.8e-16 89.4 102 53.9
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 3.0e-16 88.6 93 55.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.0e-16 88.6 101 51.5
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 3.0e-16 88.6 101 53.5
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.0e-16 88.6 101 50.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 3.0e-16 88.6 97 55.7
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.9e-16 88.2 101 51.5
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.1e-16 87.8 107 50.5
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 6.7e-16 87.4 81 58.0
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 6.7e-16 87.4 101 49.5
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.1e-15 86.7 104 51.0
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-15 86.3 101 52.5
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 2.0e-15 85.9 103 50.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.6e-15 85.5 100 48.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.7e-15 84.3 103 53.4
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 5.7e-15 84.3 101 49.5
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 5.7e-15 84.3 102 51.0
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.7e-15 84.3 101 49.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 7.4e-15 84.0 102 51.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 7.4e-15 84.0 102 51.0
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 9.7e-15 83.6 102 50.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 9.7e-15 83.6 105 50.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 2.2e-14 82.4 102 50.0
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.8e-14 82.0 102 51.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 3.7e-14 81.6 101 49.5
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 4.8e-14 81.3 101 51.5
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.3e-14 80.9 101 48.5
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.1e-13 80.1 103 47.6
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.4e-13 79.7 102 49.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.4e-13 79.7 102 51.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.4e-13 79.7 102 51.0
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.1e-13 78.2 91 47.3
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.2e-12 76.6 92 50.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 1.6e-12 76.3 91 52.7
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.6e-12 76.3 105 47.6
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.6e-12 76.3 101 49.5
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.5e-12 75.1 103 50.5
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 4.5e-12 74.7 102 45.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 4.5e-12 74.7 64 60.9
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 4.5e-12 74.7 102 45.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.5e-12 74.7 97 48.5
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.9e-12 74.3 105 45.7
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 1.0e-11 73.6 102 48.0
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 1.3e-11 73.2 83 47.0
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.7e-11 72.8 103 49.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.7e-11 72.8 103 49.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.9e-11 72.0 59 61.0
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.8e-11 71.6 62 62.9
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 5.0e-11 71.2 104 50.0
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 5.0e-11 71.2 100 42.0
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.0e-11 71.2 103 45.6
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 6.5e-11 70.9 94 44.7
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 8.5e-11 70.5 102 47.1
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.1e-10 70.1 102 44.1
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.1e-10 70.1 104 45.2
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 1.5e-10 69.7 59 62.7
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 1.9e-10 69.3 89 47.2
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.9e-10 69.3 104 50.0
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 3.2e-10 68.6 79 53.2
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 5.5e-10 67.8 97 44.3
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.2e-09 66.6 102 44.1
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.1e-09 65.9 93 45.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.7e-09 65.5 97 43.3
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.7e-09 65.5 104 49.0
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 3.6e-09 65.1 91 44.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 4.7e-09 64.7 97 41.2
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 4.7e-09 64.7 97 42.3
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 96 43.8
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 2.3e-08 62.4 107 40.2
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 5.2e-08 61.2 97 40.2
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 5.2e-08 61.2 97 40.2
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 5.2e-08 61.2 97 40.2
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 5.2e-08 61.2 97 40.2
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 6.7e-08 60.8 62 48.4
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.7e-08 60.8 92 39.1
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 8.8e-08 60.5 52 57.7
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 97 40.2
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-07 59.7 97 38.1
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-07 59.7 97 38.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.0e-07 59.3 86 45.3
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 2.6e-07 58.9 51 58.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 2.6e-07 58.9 62 54.8
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 4.4e-07 58.2 102 43.1
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 4.4e-07 58.2 99 39.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 7.5e-07 57.4 97 39.2
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 7.5e-07 57.4 97 39.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 7.5e-07 57.4 98 39.8
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 9.7e-07 57.0 52 57.7
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 9.7e-07 57.0 52 57.7
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 9.7e-07 57.0 52 57.7
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 9.7e-07 57.0 98 40.8
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 9.7e-07 57.0 92 42.4
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.2e-06 55.8 99 39.4
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.8e-06 55.5 101 40.6
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 3.7e-06 55.1 62 48.4
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 8.2e-06 53.9 52 50.0
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 8.2e-06 53.9 52 50.0
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 8.2e-06 53.9 56 51.8


User provided reference genes

Program Settings