Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 0.0e+00 1462.6 734 100.0
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 0.0e+00 1321.6 731 88.4
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 0.0e+00 1319.3 730 89.6
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 0.0e+00 1190.3 707 82.0
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 0.0e+00 1168.7 759 78.7
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 0.0e+00 1117.4 727 77.2
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 0.0e+00 1079.3 731 75.9
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.3e-310 1069.3 671 79.4
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 3.6e-300 1034.6 711 70.7
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 6.1e-292 1007.3 702 69.5
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 2.8e-289 998.4 606 76.4
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.8e-288 995.7 700 69.6
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 4.1e-288 994.6 630 74.6
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 1.0e-286 989.9 696 69.4
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.9e-285 985.7 702 68.2
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 2.5e-285 985.3 731 68.1
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 7.2e-285 983.8 685 70.2
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 8.8e-283 976.9 683 69.1
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 2.6e-282 975.3 660 71.1
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 3.4e-282 974.9 738 65.3
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.2e-281 972.2 693 68.7
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 2.2e-281 972.2 812 61.0
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 4.8e-281 971.1 773 63.8
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 4.1e-280 968.0 538 87.5
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 4.1e-280 968.0 715 65.7
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.0e-278 963.4 696 66.8
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.8e-278 961.4 641 70.7
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 6.5e-278 960.7 725 64.4
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 4.2e-277 958.0 670 68.5
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 3.6e-276 954.9 530 86.6
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.4e-274 948.3 642 69.6
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 4.4e-274 948.0 594 73.7
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 8.3e-273 943.7 719 65.1
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-271 939.1 633 70.3
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 1.9e-269 932.6 778 58.9
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 4.2e-269 931.4 628 70.7
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 5.5e-269 931.0 631 68.6
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 9.5e-269 930.2 697 66.0
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.6e-268 929.5 591 72.3
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.8e-267 926.0 617 68.9
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 3.0e-267 925.2 643 67.5
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 5.2e-267 924.5 777 58.2
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 2.2e-265 919.1 611 69.6
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.8e-264 916.0 638 68.5
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.1e-264 914.8 666 65.8
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 7.8e-263 910.6 744 61.2
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.7e-262 909.4 571 74.1
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 1.1e-261 906.7 634 68.5
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.5e-261 905.6 482 88.8
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 1.2e-260 903.3 595 70.1
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.6e-260 902.9 644 68.0
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 8.0e-260 900.6 639 66.0
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-259 899.4 742 62.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 8.9e-259 897.1 782 57.4
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 5.8e-258 894.4 648 65.3
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 6.6e-254 880.9 622 66.6
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 8.6e-254 880.6 603 68.2
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 4.3e-253 878.2 615 66.8
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 1.1e-251 873.6 595 70.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.8e-251 872.8 594 68.4
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 8.9e-251 870.5 879 53.6
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 3.4e-250 868.6 598 66.9
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 5.8e-250 867.8 534 74.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 7.5e-250 867.5 701 69.6
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.3e-249 866.7 927 50.9
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 1.4e-248 863.2 640 64.4
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.9e-248 862.8 564 70.7
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.4e-248 862.4 667 63.0
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.0e-247 857.8 597 70.2
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.7e-246 856.3 567 71.8
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 8.6e-246 854.0 604 66.9
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.2e-244 850.1 681 62.0
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.8e-243 846.3 720 61.7
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 8.3e-241 837.4 531 71.2
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 3.5e-239 832.0 793 55.0
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-235 819.7 702 61.3
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.9e-224 783.1 537 71.3
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.7e-223 779.2 501 72.9
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 6.6e-222 774.6 771 53.3
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 8.1e-220 767.7 411 88.8
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 4.9e-217 758.4 694 57.9
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 3.2e-216 755.7 565 63.4
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 9.3e-216 754.2 510 67.6
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.3e-209 733.8 523 66.3
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.0e-206 722.6 624 59.8
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 5.7e-205 718.4 522 64.9
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 5.0e-201 705.3 512 66.8
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.6e-199 700.3 616 57.5
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.0e-198 697.6 575 58.6
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 6.9e-195 684.9 521 67.4
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.6e-191 672.5 498 65.5
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 4.6e-191 672.2 620 55.6
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.1e-187 659.1 434 70.3
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 7.0e-179 631.7 757 47.6
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.7e-169 600.5 393 70.7
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 8.3e-156 555.1 350 75.1
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.8e-155 553.9 666 47.3
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 2.0e-141 507.3 285 88.1
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 3.9e-137 493.0 649 43.3
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 5.6e-136 489.2 376 62.2
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 9.9e-109 398.7 333 58.9
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 8.7e-105 385.6 327 63.6
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.6e-87 328.2 209 72.2
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.5e-80 305.1 297 53.9
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 4.8e-79 300.1 297 55.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 3.1e-78 297.4 205 68.3
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.2e-75 287.3 208 69.7
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.7e-72 275.8 675 32.1
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.2e-68 264.6 180 67.2
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 2.9e-60 237.7 245 52.2
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.6e-48 198.0 190 57.9
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-45 188.0 133 73.7
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 4.5e-45 187.2 91 90.1
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 4.7e-42 177.2 115 74.8
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 6.1e-42 176.8 218 45.0
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 4.4e-40 170.6 103 83.5
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 4.4e-40 170.6 137 65.0
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 7.5e-40 169.9 237 40.5
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 9.8e-40 169.5 666 25.1
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.0e-38 163.3 187 54.5
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.2e-34 152.5 512 24.2
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 6.1e-34 150.2 593 24.5
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 6.1e-34 150.2 121 55.4
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 5.4e-30 137.1 322 27.6
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.7e-29 134.8 78 85.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.9e-27 128.6 613 22.7
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 6.2e-26 123.6 156 51.3
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.4e-25 122.5 79 62.0
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.4e-24 117.5 100 68.0
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 5.4e-22 110.5 195 36.4
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.0e-21 107.1 59 83.1
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 6.2e-18 97.1 132 40.9
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 3.7e-15 87.8 63 63.5


User provided reference genes

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