Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G667 Trifolium pratense HOM05D000156 ORTHO05D002715 1.6e-77 292.7 150 100.0
Ca_02375_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 4.2e-38 161.8 128 70.3
Psat0s5573g0080 Pisum sativum HOM05D000156 ORTHO05D002715 5.4e-38 161.4 134 67.2
Lj3g0020554 Lotus japonicus HOM05D000156 ORTHO05D002715 4.6e-37 158.3 139 67.6
Medtr7g114700 Medicago truncatula HOM05D000156 ORTHO05D002715 1.2e-32 143.7 155 61.3
VMungo1080G0683 Vigna mungo HOM05D000156 ORTHO05D002715 1.2e-32 143.7 143 59.4
Phvul.005G033800 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 1.5e-32 143.3 143 58.7
Glyma.09G225300 Glycine max HOM05D000156 ORTHO05D002715 3.0e-28 129.0 141 59.6
Glyma.12G011600 Glycine max HOM05D000156 ORTHO05D002715 1.1e-27 127.1 139 56.1
VMungo1127G1204 Vigna mungo HOM05D000156 ORTHO05D002715 7.4e-27 124.4 145 60.0
Phvul.011G014100 Phaseolus vulgaris HOM05D000156 ORTHO05D002715 9.6e-27 124.0 145 57.9
Glyma.04G154200 Glycine max HOM05D000156 ORTHO05D002715 4.8e-26 121.7 135 61.5
Lalb_Chr25g0282711 Lupinus albus HOM05D000156 ORTHO05D002715 1.4e-25 120.2 125 58.4
FvH4_7g02140 Fragaria vesca HOM05D000156 ORTHO05D002715 4.9e-23 111.7 133 52.6
FAN06G2001 Fragaria x ananassa HOM05D000156 ORTHO05D002715 4.9e-23 111.7 133 52.6
FAN01G1538 Fragaria x ananassa HOM05D000156 ORTHO05D002715 8.4e-23 110.9 133 51.9
FAN10G1302 Fragaria x ananassa HOM05D000156 ORTHO05D002715 3.2e-22 109.0 133 51.9
Lj3g0014501 Lotus japonicus HOM05D000156 ORTHO05D002715 3.0e-20 102.4 138 48.6
Atru.chr11.2561 Acer truncatum HOM05D000156 ORTHO05D002715 5.1e-20 101.7 139 48.9
RcHm_v2.0_Chr1g0319351 Rosa chinensis HOM05D000156 ORTHO05D002715 6.7e-20 101.3 135 49.6
Medtr0047s0040 Medicago truncatula HOM05D000156 ORTHO05D002715 1.5e-19 100.1 125 48.0
FAN03G1059 Fragaria x ananassa HOM05D000156 ORTHO05D002715 1.9e-19 99.8 133 48.9
Lalb_Chr01g0000581 Lupinus albus HOM05D000156 ORTHO05D002715 2.5e-19 99.4 127 48.8
TAR623G1675 Trochodendron aralioides HOM05D000156 ORTHO05D002715 7.4e-19 97.8 132 49.2
Ca_26246_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 4.8e-18 95.1 135 50.4
TPR.G20246 Trifolium pratense HOM05D000156 ORTHO05D002715 4.8e-18 95.1 134 47.0
CiPaw.14G005000 Carya illinoinensis HOM05D000156 ORTHO05D002715 1.4e-17 93.6 145 44.8
TPR.G20585 Trifolium pratense HOM05D000156 ORTHO05D002715 2.4e-17 92.8 137 47.4
Psat7g169560 Pisum sativum HOM05D000156 ORTHO05D002715 4.1e-17 92.0 132 41.7
Thecc.10G003100 Theobroma cacao HOM05D000156 ORTHO05D002715 1.5e-16 90.1 144 43.1
Dinv32061 Davidia involucrata HOM05D000156 ORTHO05D002715 2.6e-16 89.4 133 42.9
QL04p012360 Quercus lobata HOM05D017059 ORTHO05D002715 1.3e-15 87.0 121 47.1
Dinv05031 Davidia involucrata HOM05D000156 ORTHO05D002715 3.8e-15 85.5 136 41.2
QL04p012988 Quercus lobata HOM05D000156 ORTHO05D002715 1.4e-14 83.6 121 45.5
Prupe.2G026800 Prunus persica HOM05D000156 ORTHO05D002715 4.2e-14 82.0 143 37.1
QL04p012945 Quercus lobata HOM05D017059 ORTHO05D002715 5.5e-14 81.6 121 43.8
TWI38G0747 Tripterygium wilfordii HOM05D000156 ORTHO05D002715 5.5e-14 81.6 145 40.7
GSVIVG01000865001 Vitis vinifera HOM05D000156 ORTHO05D002715 5.5e-14 81.6 146 43.2
Gohir.D10G254300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 9.3e-14 80.9 137 40.9
Gorai.011G295300 Gossypium raimondii HOM05D000156 ORTHO05D002715 1.2e-13 80.5 137 40.9
QL04p012371 Quercus lobata HOM05D000156 ORTHO05D002715 1.6e-13 80.1 123 45.5
Haze_03104 Corylus avellana HOM05D000156 ORTHO05D002715 2.1e-13 79.7 125 45.6
MBI13_g30228_MAGBIO Magnolia biondii HOM05D000156 ORTHO05D002715 2.1e-13 79.7 128 41.4
Hma1.2p1_0579F.1_g182690 Hydrangea macrophylla HOM05D000156 ORTHO05D002715 3.6e-13 79.0 127 38.6
Ciclev10031481m.g Citrus clementina HOM05D000156 ORTHO05D002715 4.6e-13 78.6 144 41.0
Gohir.A10G242300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 4.6e-13 78.6 137 40.9
Gohir.A06G158700 Gossypium hirsutum HOM05D000156 ORTHO05D002715 6.1e-13 78.2 129 44.2
Cc02_g30120 Coffea canephora HOM05D000156 ORTHO05D002715 1.0e-12 77.4 137 38.0
Glyma.11G149200 Glycine max HOM05D000156 ORTHO05D002715 1.0e-12 77.4 149 41.6
Rhsim07G0061700 Rhododendron simsii HOM05D000156 ORTHO05D002715 1.0e-12 77.4 141 35.5
vmacro13719 Vaccinium macrocarpon HOM05D000156 ORTHO05D002715 3.0e-12 75.9 142 32.4
Gorai.010G192000 Gossypium raimondii HOM05D000156 ORTHO05D002715 5.1e-12 75.1 129 43.4
Gohir.D06G164600 Gossypium hirsutum HOM05D000156 ORTHO05D002715 1.1e-11 73.9 129 42.6
QL04p012977 Quercus lobata HOM05D017059 ORTHO05D002715 1.1e-11 73.9 121 43.0
ATR0721G167 Amborella trichopoda HOM05D000156 ORTHO05D002715 1.9e-11 73.2 136 41.2
Ciclev10005065m.g Citrus clementina HOM05D000156 ORTHO05D002715 1.9e-11 73.2 135 41.5
Duzib114G0688 Durio zibethinus HOM05D000156 ORTHO05D001430 4.3e-11 72.0 138 39.9
Gohir.D13G012000 Gossypium hirsutum HOM05D000156 ORTHO05D002715 4.3e-11 72.0 132 40.9
Dinv18685 Davidia involucrata HOM05D000156 ORTHO05D002715 5.7e-11 71.6 128 39.1
MD04G1103600 Malus domestica HOM05D000156 ORTHO05D001430 7.4e-11 71.2 145 40.0
Manes.11G002000 Manihot esculenta HOM05D000156 ORTHO05D002715 1.3e-10 70.5 125 44.0
Nn7g36436 Nelumbo nucifera HOM05D000156 ORTHO05D002715 1.3e-10 70.5 128 38.3
Sed0022415 Sechium edule HOM05D000156 ORTHO05D002715 1.3e-10 70.5 142 39.4
Actinidia06277 Actinidia chinensis HOM05D000156 ORTHO05D002715 3.7e-10 68.9 130 39.2
QL04p012299 Quercus lobata HOM05D017059 ORTHO05D002715 3.7e-10 68.9 121 38.8
Thecc.05G145700 Theobroma cacao HOM05D000156 ORTHO05D002715 3.7e-10 68.9 132 42.4
QL93p2000_0053 Quercus lobata HOM05D017059 ORTHO05D002715 4.8e-10 68.6 121 41.3
CANSAT80G0587 Cannabis sativa HOM05D000156 ORTHO05D002715 6.3e-10 68.2 133 38.3
Gorai.013G013200 Gossypium raimondii HOM05D000156 ORTHO05D002715 6.3e-10 68.2 132 39.4
DCAR_003234 Daucus carota HOM05D000156 ORTHO05D002715 8.2e-10 67.8 141 36.2
TWI15G1074 Tripterygium wilfordii HOM05D000156 ORTHO05D001430 8.2e-10 67.8 144 39.6
GSVIVG01033546001 Vitis vinifera HOM05D000156 ORTHO05D002715 8.2e-10 67.8 131 40.5
COL.COLO4_21310 Corchorus olitorius HOM05D000156 ORTHO05D002715 1.1e-09 67.4 136 40.4
arahy.Tifrunner.gnm1.ann1.6Q660G Arachis hypogaea HOM05D000156 ORTHO05D002715 1.8e-09 66.6 141 37.6
Duzib128G0354 Durio zibethinus HOM05D000156 ORTHO05D002715 1.8e-09 66.6 136 40.4
DCAR_031820 Daucus carota HOM05D000156 ORTHO05D002715 2.4e-09 66.2 131 35.1
Gohir.A13G011300 Gossypium hirsutum HOM05D000156 ORTHO05D002715 3.1e-09 65.9 132 38.6
CDE08G0133 Ceratophyllum demersum HOM05D000156 ORTHO05D002715 4.1e-09 65.5 126 37.3
THA.LOC104819114 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 5.3e-09 65.1 133 35.3
CiPaw.09G041800 Carya illinoinensis HOM05D000156 ORTHO05D002715 6.9e-09 64.7 127 37.8
MSTRG.20055 Avicennia marina HOM05D000156 ORTHO05D001430 9.1e-09 64.3 137 37.2
Cpa.g.sc197.18 Carica papaya HOM05D000156 ORTHO05D002715 9.1e-09 64.3 128 38.3
Duzib106G0915 Durio zibethinus HOM05D000156 ORTHO05D002715 9.1e-09 64.3 144 34.7
PSO339G1797 Papaver somniferum HOM05D000156 ORTHO05D001430 9.1e-09 64.3 141 36.9
Peaxi162Scf01604g00011 Petunia axillaris HOM05D000156 ORTHO05D001430 9.1e-09 64.3 141 39.7
PGR044G2679 Punica granatum HOM05D000156 ORTHO05D002715 9.1e-09 64.3 123 40.7
MD12G1123500 Malus domestica HOM05D000156 ORTHO05D001430 1.2e-08 63.9 147 38.8
Oeu024769.1 Olea europaea HOM05D000156 ORTHO05D002715 1.2e-08 63.9 132 37.9
Haze_19744 Corylus avellana HOM05D000156 ORTHO05D002715 1.5e-08 63.5 130 37.7
Cfa016757 Carpinus fangiana HOM05D000156 ORTHO05D002715 2.0e-08 63.2 128 37.5
Cc06_g18300 Coffea canephora HOM05D000156 ORTHO05D002715 2.0e-08 63.2 128 37.5
CDE02G1360 Ceratophyllum demersum HOM05D000156 ORTHO05D001430 2.6e-08 62.8 137 38.7
QL04p012885 Quercus lobata HOM05D017059 ORTHO05D002715 2.6e-08 62.8 98 44.9
SGA_v2.0_scaffold122G33238 Striga asiatica HOM05D000156 ORTHO05D001430 3.4e-08 62.4 136 40.4
Duzib114G1024 Durio zibethinus HOM05D000156 ORTHO05D002715 4.5e-08 62.0 142 35.2
QL08p046942 Quercus lobata HOM05D000156 ORTHO05D002570 4.5e-08 62.0 144 36.8
CSS0025309 Camellia sinensis var. sinensis HOM05D000156 ORTHO05D002715 5.9e-08 61.6 132 36.4
Duzib106G1234 Durio zibethinus HOM05D000156 ORTHO05D001430 5.9e-08 61.6 141 37.6
MD02G1297300 Malus domestica HOM05D000156 ORTHO05D002715 5.9e-08 61.6 151 31.1
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 7.7e-08 61.2 128 36.7
Eucgr.J01207 Eucalyptus grandis HOM05D000156 ORTHO05D002715 7.7e-08 61.2 145 33.8
COL.COLO4_23727 Corchorus olitorius HOM05D000156 ORTHO05D001430 1.0e-07 60.8 141 38.3
Sc11g0006800 Simmondsia chinensis HOM05D000156 ORTHO05D002715 1.0e-07 60.8 131 35.1
arahy.Tifrunner.gnm1.ann1.0YJG6G Arachis hypogaea HOM05D000156 ORTHO05D002715 1.3e-07 60.5 146 36.3
A02p01950 Brassica napus HOM05D000156 ORTHO05D002715 1.3e-07 60.5 132 37.1
Gohir.D09G116200 Gossypium hirsutum HOM05D000156 ORTHO05D002715 2.2e-07 59.7 132 39.4
QL04p012302 Quercus lobata HOM05D017059 ORTHO05D002715 2.2e-07 59.7 98 42.9
TAR369G0197 Trochodendron aralioides HOM05D000156 ORTHO05D001430 2.2e-07 59.7 144 36.8
Peaxi162Scf00156g00916 Petunia axillaris HOM05D000156 ORTHO05D001430 2.9e-07 59.3 145 36.6
C02p06170 Brassica napus HOM05D000156 ORTHO05D002715 3.8e-07 58.9 126 36.5
GSVIVG01033548001 Vitis vinifera HOM05D000156 ORTHO05D002715 3.8e-07 58.9 131 36.6
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 5.0e-07 58.5 126 38.1
Gorai.006G134500 Gossypium raimondii HOM05D000156 ORTHO05D002715 5.0e-07 58.5 132 38.6
Potri.001G021000 Populus trichocarpa HOM05D000156 ORTHO05D002715 6.5e-07 58.2 145 37.2
PGSC0003DMG402017590 Solanum tuberosum HOM05D000156 ORTHO05D001430 6.5e-07 58.2 141 38.3
THA.LOC104823218 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 6.5e-07 58.2 134 32.8
Cc09_g02830 Coffea canephora HOM05D000156 ORTHO05D001430 8.5e-07 57.8 140 33.6
Atru.chr1.1185 Acer truncatum HOM05D000156 ORTHO05D002715 1.1e-06 57.4 128 38.3
CDE09G0713 Ceratophyllum demersum HOM05D000156 ORTHO05D002715 1.1e-06 57.4 125 33.6
Dinv39674 Davidia involucrata HOM05D000156 ORTHO05D002715 1.1e-06 57.4 131 35.9
BraA02t05168Z Brassica rapa HOM05D000156 ORTHO05D002715 1.4e-06 57.0 132 34.8
Migut.B01194 Erythranthe guttata HOM05D000156 ORTHO05D002715 1.4e-06 57.0 126 32.5
MSTRG.19834 Avicennia marina HOM05D000156 ORTHO05D002715 1.9e-06 56.6 128 33.6
BcaB01g05357 Brassica carinata HOM05D000156 ORTHO05D002715 1.9e-06 56.6 132 31.8
FvH4_6g15440 Fragaria vesca HOM05D000156 ORTHO05D001430 1.9e-06 56.6 144 35.4
FAN09G3218 Fragaria x ananassa HOM05D000156 ORTHO05D001430 1.9e-06 56.6 144 35.4
QL07p005574 Quercus lobata HOM05D000156 ORTHO05D002715 1.9e-06 56.6 135 35.6
Solyc10g086060.2 Solanum lycopersicum HOM05D000156 ORTHO05D001430 1.9e-06 56.6 141 38.3
BcaNung01152 Brassica carinata HOM05D000156 ORTHO05D002715 2.5e-06 56.2 132 35.6
BolC2t06558H Brassica oleracea HOM05D000156 ORTHO05D002715 2.5e-06 56.2 132 35.6
FAN05G3810 Fragaria x ananassa HOM05D000156 ORTHO05D001430 2.5e-06 56.2 144 36.1
Potri.016G086300 Populus trichocarpa HOM05D000156 ORTHO05D001430 2.5e-06 56.2 139 35.3
QL04p012356 Quercus lobata HOM05D017059 ORTHO05D002715 2.5e-06 56.2 121 36.4
TWI63G0602 Tripterygium wilfordii HOM05D000156 ORTHO05D001430 2.5e-06 56.2 143 35.7
Carub.0005s1865 Capsella rubella HOM05D000156 ORTHO05D001430 3.2e-06 55.8 130 36.2
Carub.0006s1162 Capsella rubella HOM05D000156 ORTHO05D002715 3.2e-06 55.8 126 32.5
Nitab4.5_0000754g0120 Nicotiana tabacum HOM05D000156 ORTHO05D001430 3.2e-06 55.8 142 37.3
RcHm_v2.0_Chr3g0468921 Rosa chinensis HOM05D000156 ORTHO05D001430 3.2e-06 55.8 144 36.1
Sc09g0006740 Simmondsia chinensis HOM05D000156 ORTHO05D001430 3.2e-06 55.8 142 35.2
THA.LOC104826707 Tarenaya hassleriana HOM05D000156 ORTHO05D002715 3.2e-06 55.8 127 33.9
FAN02G0016 Fragaria x ananassa HOM05D000156 ORTHO05D001430 4.2e-06 55.5 144 36.8
BcaC03g12969 Brassica carinata HOM05D000156 ORTHO05D002715 5.5e-06 55.1 130 31.5
C02p01640 Brassica napus HOM05D000156 ORTHO05D002715 5.5e-06 55.1 130 31.5
BolC2t06129H Brassica oleracea HOM05D000156 ORTHO05D002715 5.5e-06 55.1 130 31.5
Ca_12265_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 5.5e-06 55.1 131 35.1
Ca_30549_v3 Cicer arietinum L. HOM05D000156 ORTHO05D002715 5.5e-06 55.1 131 35.1
MELO3C025505.2 Cucumis melo HOM05D000156 ORTHO05D001430 5.5e-06 55.1 139 35.3
Duzib128G1149 Durio zibethinus HOM05D000156 ORTHO05D001430 5.5e-06 55.1 144 35.4
Lj2g0024350 Lotus japonicus HOM05D000156 ORTHO05D001430 5.5e-06 55.1 135 35.6
Manes.04G163400 Manihot esculenta HOM05D000156 ORTHO05D002715 5.5e-06 55.1 47 59.6
Nitab4.5_0000316g0270 Nicotiana tabacum HOM05D000156 ORTHO05D002715 5.5e-06 55.1 144 30.6
QL07p005292 Quercus lobata HOM05D000156 ORTHO05D002715 5.5e-06 55.1 135 34.8
Hund24651 Selenicereus undatus HOM05D000156 ORTHO05D002715 5.5e-06 55.1 131 35.1
Gorai.012G093900 Gossypium raimondii HOM05D000156 ORTHO05D001430 7.2e-06 54.7 133 37.6
Sp6g30560 Schrenkiella parvula HOM05D000156 ORTHO05D002715 7.2e-06 54.7 132 34.1
Sopen10g035420 Solanum pennellii HOM05D000156 ORTHO05D001430 7.2e-06 54.7 141 37.6
CARHR162050 Cardamine hirsuta HOM05D000156 ORTHO05D001430 9.4e-06 54.3 135 36.3
CsaV3_5G025950 Cucumis sativus L. HOM05D000156 ORTHO05D001430 9.4e-06 54.3 139 35.3
FAN14G0802 Fragaria x ananassa HOM05D000156 ORTHO05D002715 9.4e-06 54.3 131 33.6
Gohir.A09G120100 Gossypium hirsutum HOM05D000156 ORTHO05D002715 9.4e-06 54.3 132 37.1
Gohir.D04G083200 Gossypium hirsutum HOM05D000156 ORTHO05D001430 9.4e-06 54.3 133 37.6
Lj1C1123G4 Lonicera japonica HOM05D000156 ORTHO05D002715 9.4e-06 54.3 73 43.8
Rhsim03G0123500 Rhododendron simsii HOM05D000156 ORTHO05D001430 9.4e-06 54.3 143 37.1


User provided reference genes

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