Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.5e-192 676.4 441 100.0
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.4e-145 520.4 443 66.1
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.1e-139 500.7 446 67.5
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 5.3e-134 481.9 449 61.5
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 5.0e-132 475.3 445 61.8
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 4.2e-131 472.2 443 61.2
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 5.5e-131 471.9 483 71.6
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.4e-129 467.2 448 60.9
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 7.5e-128 461.5 446 72.4
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 5.5e-123 445.3 451 68.3
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.7e-122 442.2 415 61.7
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 3.0e-121 439.5 444 58.3
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.7e-109 399.8 453 60.5
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 8.9e-105 384.8 441 52.2
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.1e-102 377.9 437 52.2
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 7.8e-101 371.7 442 50.0
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 1.7e-100 370.5 516 55.4
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 3.9e-100 369.4 440 50.2
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.9e-100 369.4 442 50.0
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 7.3e-99 365.2 441 50.1
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 7.3e-99 365.2 442 49.5
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 9.5e-99 364.8 441 47.8
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.6e-98 364.0 469 63.1
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 4.0e-97 359.4 414 51.0
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.4e-96 355.9 438 48.9
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.4e-96 355.9 472 57.2
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 1.3e-95 354.4 439 62.9
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.3e-95 354.4 442 48.0
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.9e-95 353.2 442 48.2
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 6.4e-95 352.1 425 50.6
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 8.3e-95 351.7 443 54.4
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 8.3e-95 351.7 428 51.4
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 8.3e-95 351.7 455 60.0
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.1e-94 351.3 440 57.3
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 3.5e-93 346.3 484 59.5
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 4.6e-93 345.9 443 47.4
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 6.6e-92 342.0 442 62.7
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 6.6e-92 342.0 460 61.5
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 8.6e-92 341.7 448 62.7
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 8.6e-92 341.7 421 47.7
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.1e-91 341.3 460 61.5
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 7.3e-91 338.6 484 60.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.6e-90 337.4 473 60.0
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.8e-90 336.7 451 61.6
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.8e-90 336.7 502 57.8
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.1e-89 334.7 486 44.4
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 1.4e-89 334.3 517 56.5
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.8e-89 334.0 411 47.9
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.4e-89 333.6 412 59.7
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.1e-89 333.2 414 48.3
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.2e-88 331.3 428 47.4
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 1.5e-88 330.9 504 53.0
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 3.4e-88 329.7 441 46.7
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 4.4e-88 329.3 523 52.2
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 4.4e-88 329.3 438 47.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.8e-88 328.9 460 60.9
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 5.8e-88 328.9 444 46.8
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 1.4e-86 324.3 441 45.4
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 5.4e-86 322.4 505 56.4
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 4.6e-85 319.3 442 54.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.0e-85 318.9 489 56.6
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 7.8e-85 318.5 491 55.8
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 7.8e-85 318.5 448 44.6
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.7e-84 317.4 491 55.8
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.3e-84 317.0 442 44.1
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 3.9e-84 316.2 444 57.4
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.6e-84 315.5 507 55.8
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.5e-83 313.5 492 53.5
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 3.3e-83 313.2 462 43.3
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 5.6e-83 312.4 513 51.9
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 1.3e-82 311.2 443 48.8
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 1.6e-82 310.8 434 59.4
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.6e-82 310.8 461 53.8
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.8e-81 307.4 487 56.5
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.4e-81 307.0 490 55.1
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 2.6e-80 303.5 438 44.7
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 4.4e-80 302.8 441 51.5
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 7.6e-80 302.0 441 55.1
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 8.4e-79 298.5 441 50.8
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.2e-77 294.7 398 46.2
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.7e-77 293.5 440 48.9
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 2.7e-77 293.5 461 49.5
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.7e-77 293.5 440 48.9
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 4.6e-77 292.7 461 53.1
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 6.0e-77 292.4 440 53.9
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 7.9e-77 292.0 374 47.1
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 8.7e-76 288.5 447 56.2
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 1.3e-74 284.6 440 55.0
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 8.1e-74 282.0 441 48.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 3.1e-73 280.0 497 55.1
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 5.3e-73 279.3 449 55.5
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 4.5e-72 276.2 370 45.7
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 7.6e-72 275.4 447 41.2
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 3.8e-71 273.1 400 44.5
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.1e-70 271.6 442 51.4
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.3e-68 264.6 442 38.9
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 3.0e-68 263.5 375 44.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 3.9e-68 263.1 448 39.7
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 2.5e-67 260.4 463 51.8
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 2.1e-66 257.3 583 45.8
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 4.8e-66 256.1 460 45.2
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 5.3e-65 252.7 463 48.6
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 5.8e-64 249.2 502 40.4
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 1.3e-63 248.1 393 41.0
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.1e-62 245.0 462 49.8
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.5e-62 243.8 455 49.7
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 3.2e-62 243.4 588 44.0
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 3.2e-62 243.4 440 38.0
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 4.2e-62 243.0 417 39.8
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-61 241.1 419 40.8
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 1.9e-59 234.2 373 48.5
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.8e-58 230.3 497 46.5
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 2.8e-58 230.3 497 46.5
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 6.9e-57 225.7 178 68.5
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.5e-56 224.6 426 44.4
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.5e-56 223.0 490 45.5
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.9e-54 217.6 142 76.8
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 2.8e-50 203.8 377 45.4
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.4e-49 200.7 142 71.8
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 8.5e-47 192.2 459 33.6
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.7e-42 177.9 161 59.0
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 6.3e-42 176.0 456 32.9
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 8.2e-42 175.6 149 61.7
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.4e-40 170.2 459 42.0
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 4.7e-37 159.8 401 34.2
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 4.8e-34 149.8 113 67.3
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.0e-28 132.1 114 60.5
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 2.0e-24 117.9 355 31.3
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 6.5e-23 112.8 74 73.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 6.5e-23 112.8 76 69.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 1.2e-16 92.0 95 51.6
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 7.2e-14 82.8 88 44.3
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 4.7e-13 80.1 86 48.8


User provided reference genes

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