Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 8.9e-60 233.4 119 100.0
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 5.1e-23 111.3 72 79.2
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 5.1e-23 111.3 72 79.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 8.7e-23 110.5 72 79.2
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.1e-22 110.2 72 79.2
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 2.5e-22 109.0 72 77.8
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.3e-22 108.2 72 76.4
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 2.2e-21 105.9 72 75.0
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 1.1e-20 103.6 72 72.2
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.1e-20 103.6 72 72.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.1e-20 103.6 72 75.0
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.8e-20 102.8 75 68.0
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.4e-20 102.4 72 72.2
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 2.4e-20 102.4 72 70.8
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 3.1e-20 102.1 79 64.6
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.1e-20 101.7 72 72.2
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 5.3e-20 101.3 72 70.8
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 6.9e-20 100.9 72 68.1
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 9.0e-20 100.5 97 56.7
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 9.0e-20 100.5 72 69.4
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 9.0e-20 100.5 75 65.3
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 9.0e-20 100.5 72 70.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.5e-19 99.8 72 69.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.5e-19 99.8 72 68.1
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.5e-19 99.8 72 69.4
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.5e-19 99.8 72 68.1
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.0e-19 99.4 72 66.7
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 2.0e-19 99.4 72 68.1
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.6e-19 99.0 73 69.9
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.4e-19 98.6 72 66.7
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.4e-19 98.6 72 66.7
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.4e-19 98.6 72 66.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 3.4e-19 98.6 59 81.4
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 3.4e-19 98.6 75 64.0
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 4.5e-19 98.2 84 61.9
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 5.9e-19 97.8 72 66.7
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.0e-18 97.1 72 65.3
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-18 97.1 72 69.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.0e-18 97.1 72 66.7
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.0e-18 97.1 72 65.3
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.0e-18 97.1 72 65.3
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.3e-18 96.7 73 68.5
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.3e-18 96.7 72 68.1
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.3e-18 96.7 72 66.7
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.7e-18 96.3 72 66.7
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.7e-18 96.3 72 65.3
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.2e-18 95.9 75 64.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.9e-18 95.5 72 63.9
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.9e-18 95.5 59 81.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 3.8e-18 95.1 72 62.5
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 3.8e-18 95.1 73 65.8
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 3.8e-18 95.1 72 63.9
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 5.0e-18 94.7 73 65.8
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 5.0e-18 94.7 75 61.3
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.5e-18 94.4 60 83.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 6.5e-18 94.4 73 65.8
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 8.5e-18 94.0 73 65.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 8.5e-18 94.0 72 65.3
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.5e-18 94.0 75 61.3
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.5e-18 94.0 75 61.3
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.1e-17 93.6 72 63.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.1e-17 93.6 59 79.7
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 1.9e-17 92.8 79 58.2
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.5e-17 92.4 72 63.9
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 4.2e-17 91.7 72 61.1
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.5e-17 91.3 59 74.6
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 7.2e-17 90.9 74 60.8
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 7.2e-17 90.9 74 60.8
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 9.4e-17 90.5 74 59.5
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 9.4e-17 90.5 59 71.2
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 9.4e-17 90.5 59 74.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.2e-16 90.1 74 59.5
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.2e-16 90.1 74 59.5
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.2e-16 90.1 75 58.7
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.6e-16 89.7 72 61.1
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 2.7e-16 89.0 71 60.6
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 2.7e-16 89.0 71 60.6
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 2.7e-16 89.0 71 60.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.6e-16 88.6 74 58.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 3.6e-16 88.6 107 50.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.6e-16 88.2 74 58.1
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.6e-16 88.2 59 72.9
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.0e-15 87.0 73 60.3
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.0e-15 87.0 76 56.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.0e-15 87.0 74 58.1
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.0e-15 87.0 74 58.1
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.4e-15 86.7 86 53.5
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.8e-15 86.3 74 59.5
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.8e-15 86.3 58 75.9
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.8e-15 86.3 76 56.6
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.9e-15 85.1 58 70.7
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 3.9e-15 85.1 74 58.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 5.1e-15 84.7 56 76.8
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 8.8e-15 84.0 74 58.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 8.8e-15 84.0 74 55.4
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.8e-15 84.0 74 55.4
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.1e-14 83.6 58 69.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.1e-14 83.6 74 55.4
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.5e-14 83.2 74 55.4
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.0e-14 82.8 59 67.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 2.5e-14 82.4 53 79.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 5.7e-14 81.3 74 55.4
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.7e-14 81.3 74 55.4
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 5.7e-14 81.3 74 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 9.7e-14 80.5 73 52.1
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 2.2e-13 79.3 74 54.1
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 2.2e-13 79.3 74 54.1
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 6.3e-13 77.8 59 61.0
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.1e-12 77.0 85 55.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 3.1e-12 75.5 61 62.3
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.1e-12 75.5 76 51.3
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.1e-12 75.1 58 58.6
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 5.3e-12 74.7 55 67.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 3.4e-11 72.0 52 71.2
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.5e-10 67.4 53 62.3
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 7.2e-09 64.3 73 45.2
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.3e-07 59.3 52 59.6


User provided reference genes

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