Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.7e-165 585.9 293 100.0
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 4.6e-150 534.6 290 90.7
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-146 523.1 290 89.7
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.2e-137 493.4 288 84.0
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.4e-133 479.9 290 81.4
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 8.8e-133 477.2 288 82.6
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.3e-128 463.4 289 78.5
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 2.2e-128 462.6 290 77.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.1e-122 443.7 288 76.7
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 4.1e-122 441.8 289 75.1
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.5e-121 438.3 289 74.4
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.4e-119 433.3 267 79.8
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 4.2e-111 405.2 292 69.2
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 7.2e-111 404.4 292 68.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 7.2e-111 404.4 292 68.8
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 3.1e-106 389.0 289 68.2
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.1e-103 380.6 293 66.2
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.5e-103 380.2 293 66.2
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 1.6e-102 376.7 287 63.8
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 8.0e-102 374.4 289 65.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.5e-100 370.2 289 65.1
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 5.7e-100 368.2 290 62.4
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.3e-99 367.1 292 62.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 2.8e-99 365.9 287 64.8
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 3.7e-99 365.5 286 62.9
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.4e-98 363.6 291 64.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 4.1e-98 362.1 289 60.2
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 5.4e-98 361.7 288 63.5
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.2e-97 360.5 287 59.6
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.2e-97 360.5 295 59.7
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 1.2e-97 360.5 288 60.8
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 4.5e-97 358.6 289 59.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 5.9e-97 358.2 291 61.9
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-96 357.1 288 61.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 5.0e-96 355.1 289 60.2
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.1e-95 354.0 286 60.5
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.5e-95 353.6 289 62.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.5e-95 352.8 286 60.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 7.2e-95 351.3 292 60.3
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.2e-95 351.3 288 61.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.2e-94 350.5 289 62.3
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 2.8e-94 349.4 288 59.7
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 4.7e-94 348.6 286 59.4
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 6.1e-94 348.2 290 60.0
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.1e-94 348.2 288 60.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 8.0e-94 347.8 286 60.1
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.0e-93 347.4 288 60.4
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 1.0e-93 347.4 290 58.3
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.4e-93 347.1 290 59.3
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.8e-93 346.7 288 60.8
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.8e-93 346.7 255 70.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.8e-93 346.7 290 61.7
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 2.3e-93 346.3 290 61.0
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 2.3e-93 346.3 274 66.4
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 1.2e-92 344.0 288 62.5
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.4e-92 342.0 287 59.9
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.8e-91 339.3 290 58.6
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.7e-91 339.0 287 59.6
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.9e-91 338.6 287 59.6
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-90 337.4 275 60.7
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 2.4e-90 336.3 286 60.1
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 5.4e-90 335.1 287 59.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 4.5e-89 332.0 288 59.0
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.3e-88 330.5 286 55.6
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.7e-88 330.1 290 55.9
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 1.7e-88 330.1 290 56.2
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 2.5e-87 326.2 289 56.1
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.2e-86 323.9 288 53.8
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.8e-86 322.8 288 55.2
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 4.7e-86 322.0 289 56.7
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 4.7e-86 322.0 289 56.7
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 1.4e-85 320.5 290 55.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.8e-85 320.1 290 56.2
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.3e-85 319.7 287 56.4
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.0e-85 318.9 289 54.7
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 6.8e-85 318.2 292 52.7
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 6.8e-85 318.2 284 56.0
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 8.9e-85 317.8 164 93.3
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-84 317.0 287 57.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.0e-84 316.6 288 54.5
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.4e-84 315.8 285 54.7
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.4e-84 315.8 289 55.0
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 4.4e-84 315.5 289 54.3
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.4e-84 315.5 284 55.6
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 7.5e-84 314.7 291 53.3
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 9.8e-84 314.3 284 55.6
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.3e-83 313.9 291 54.3
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.2e-83 313.2 288 53.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.9e-83 312.8 288 55.2
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.7e-83 312.4 284 56.0
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 8.3e-83 311.2 289 54.3
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.1e-82 310.8 286 54.5
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.4e-82 310.5 289 54.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.4e-82 310.5 287 53.3
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.4e-82 309.7 282 56.4
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 2.7e-81 306.2 282 56.0
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 4.6e-81 305.4 282 55.3
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 6.0e-81 305.1 284 55.3
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 7.8e-81 304.7 291 54.0
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.7e-80 303.5 291 53.6
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.7e-80 303.5 284 53.9
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 5.6e-79 298.5 286 53.1
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.1e-78 296.6 287 55.1
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 6.2e-78 295.0 289 52.9
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.0e-77 292.4 287 49.8
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 6.8e-77 291.6 338 46.7
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-75 287.0 285 51.9
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.1e-74 282.3 287 48.1
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.1e-74 282.3 296 50.3
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.7e-73 279.6 287 48.1
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.3e-72 276.6 297 49.5
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.5e-71 273.1 273 58.6
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 5.6e-71 271.9 291 45.4
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 7.3e-71 271.6 285 49.8
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.6e-70 270.4 232 57.8
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 2.9e-67 259.6 289 46.7
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 8.3e-67 258.1 189 68.3
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 3.3e-63 246.1 330 41.8
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.1e-61 239.6 284 47.9
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 4.0e-61 239.2 236 52.1
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 8.9e-61 238.0 285 44.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.4e-60 236.1 287 44.6
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.7e-59 233.8 252 50.4
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 3.8e-59 232.6 181 61.3
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 8.4e-59 231.5 288 45.5
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.7e-56 223.8 184 60.3
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.1e-55 221.1 154 67.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.3e-55 219.2 163 63.8
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.1e-53 214.5 195 53.8
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.3e-53 212.2 288 41.0
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.4e-52 209.5 139 76.3
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.2e-51 206.8 171 60.2
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.3e-50 201.4 213 51.6
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 7.8e-49 198.4 350 33.4
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 6.2e-46 188.7 333 34.5
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.9e-45 185.3 289 39.1
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 9.3e-42 174.9 323 35.0
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 9.3e-42 174.9 300 35.0
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.1e-39 167.9 269 40.1
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.5e-39 167.5 276 38.8
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.8e-38 163.3 303 34.7
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 6.9e-37 158.7 203 38.9
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.6e-36 156.8 326 31.6
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 7.1e-34 148.7 212 42.5
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 6.0e-33 145.6 107 56.1
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.3e-32 143.7 97 69.1
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 6.7e-32 142.1 126 56.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 3.4e-28 129.8 302 34.1
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 4.5e-28 129.4 90 63.3
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 2.2e-27 127.1 304 31.9
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.3e-24 117.9 118 53.4
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 7.7e-20 102.1 152 40.1
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 1.1e-18 98.2 283 23.7
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-18 97.4 78 66.7
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 7.2e-18 95.5 112 40.2
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 2.3e-16 90.5 176 36.4
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.1e-15 88.2 62 67.7
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-09 67.8 73 50.7
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 2.7e-09 67.0 34 88.2
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-07 60.8 111 36.0


User provided reference genes

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