Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.2e-154 548.1 303 100.0
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.4e-104 383.6 300 78.0
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 6.3e-102 374.8 315 74.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 7.0e-101 371.3 304 73.4
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 3.8e-99 365.5 306 72.5
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-98 364.0 309 71.2
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.1e-98 364.0 310 71.0
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.2e-97 360.5 303 71.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.0e-96 355.5 320 67.8
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.5e-95 353.6 309 70.9
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 4.4e-95 352.1 304 71.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.3e-94 350.5 318 70.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.8e-94 349.4 319 67.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.1e-93 347.4 302 68.2
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.4e-93 347.1 302 68.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 4.1e-93 345.5 309 70.9
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.7e-92 342.8 304 66.8
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 5.9e-92 341.7 299 68.6
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.8e-91 339.0 294 69.0
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 8.6e-91 337.8 302 66.9
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.3e-90 335.9 311 67.5
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.3e-90 334.7 303 66.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 6.1e-89 331.6 298 70.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.0e-88 330.9 318 61.9
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.8e-88 330.1 299 68.2
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.3e-88 329.7 303 69.3
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 7.5e-87 324.7 295 68.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 9.8e-87 324.3 296 68.2
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.3e-86 323.9 304 69.4
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 2.2e-86 323.2 310 65.8
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.9e-86 322.8 315 61.6
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 6.4e-86 321.6 313 65.8
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.3e-86 321.2 298 67.1
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.1e-85 320.9 313 66.1
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.4e-85 320.5 304 62.2
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.4e-85 320.5 320 61.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.4e-85 319.7 317 63.1
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.0e-85 318.2 306 67.0
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 7.0e-85 318.2 318 68.9
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 9.2e-85 317.8 304 67.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-84 317.4 302 68.5
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-84 317.4 300 66.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-84 317.4 300 66.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.0e-84 316.6 304 62.2
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.9e-84 315.1 310 63.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 5.0e-83 312.0 314 60.5
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.1e-82 310.8 314 61.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.1e-82 310.8 308 65.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.9e-82 310.1 302 68.2
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.9e-82 310.1 308 64.9
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 2.5e-82 309.7 312 64.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.3e-82 308.1 315 66.3
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.8e-81 306.2 306 67.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.6e-81 305.8 310 65.2
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.6e-81 305.8 311 61.7
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.8e-80 303.5 306 67.0
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.8e-80 303.5 295 62.0
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 5.2e-80 302.0 300 65.0
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.8e-80 301.6 312 61.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.2e-79 300.8 307 64.5
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 1.5e-79 300.4 307 61.6
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.4e-79 299.3 303 65.7
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 4.4e-79 298.9 302 64.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 9.8e-79 297.7 304 60.9
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.7e-78 297.0 304 61.8
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 3.7e-78 295.8 313 62.3
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 6.4e-78 295.0 309 67.6
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 1.4e-77 293.9 304 61.2
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.4e-77 293.9 302 61.6
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.4e-77 293.1 303 61.1
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.4e-77 293.1 303 61.1
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 7.0e-77 291.6 310 64.2
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.2e-76 290.8 302 63.6
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.6e-76 290.4 310 63.9
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 3.5e-76 289.3 301 59.5
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 7.8e-76 288.1 319 59.2
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.3e-75 286.6 304 63.2
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 5.0e-75 285.4 308 62.0
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 4.3e-74 282.3 341 57.8
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 7.3e-74 281.6 341 57.8
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 9.5e-74 281.2 286 64.7
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.1e-73 280.0 318 61.9
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.8e-73 279.6 299 60.2
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.7e-73 278.9 325 61.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.7e-73 278.9 318 58.2
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 8.1e-73 278.1 284 63.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.4e-72 277.3 303 59.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.1e-72 276.2 293 61.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.0e-72 275.8 306 61.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 5.2e-72 275.4 318 60.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.0e-71 273.5 309 60.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.4e-71 272.7 310 58.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.8e-71 271.9 327 57.2
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 7.5e-71 271.6 320 57.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 7.5e-71 271.6 309 62.1
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 7.5e-71 271.6 354 55.4
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 9.9e-71 271.2 304 64.1
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-70 270.0 301 63.8
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-70 270.0 301 63.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.9e-70 269.6 318 61.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.4e-69 267.3 310 60.3
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.4e-69 267.3 313 55.3
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.9e-69 266.9 304 62.2
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 2.4e-69 266.5 312 60.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 3.2e-69 266.2 304 58.9
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.5e-68 262.7 308 57.1
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.5e-68 262.7 322 57.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.6e-68 262.3 307 60.9
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.0e-68 261.9 317 59.3
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.0e-67 261.2 298 57.7
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 5.1e-67 258.8 395 49.4
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.3e-66 256.1 315 56.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-65 254.2 258 64.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.1e-64 251.1 311 58.8
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 6.8e-64 248.4 294 60.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 2.0e-63 246.9 320 55.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.6e-63 246.5 302 57.3
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.9e-62 243.0 303 57.1
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 8.4e-62 241.5 236 70.3
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-61 240.7 297 55.6
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 1.4e-61 240.7 233 65.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.4e-61 240.0 331 49.5
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.7e-60 236.5 323 53.6
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.6e-60 235.7 329 49.2
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.3e-59 234.2 324 52.8
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 6.6e-59 231.9 300 55.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-58 231.1 302 54.0
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.3e-58 229.6 299 56.2
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.6e-57 227.3 304 53.3
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.1e-57 226.9 296 55.4
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.8e-56 223.8 212 66.5
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.0e-56 222.6 309 53.1
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 6.9e-56 221.9 299 51.5
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.3e-54 217.6 302 55.6
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.3e-54 217.6 312 52.6
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.7e-54 217.2 312 55.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.7e-54 217.2 297 53.2
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.8e-54 216.1 310 51.9
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 4.2e-53 212.6 304 51.0
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 7.1e-53 211.8 294 52.0
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 8.7e-51 204.9 202 64.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.9e-50 203.8 301 52.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.9e-50 203.8 311 45.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.8e-49 199.9 213 65.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.0e-48 196.1 299 50.8
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.5e-47 194.1 222 59.0
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.2e-46 190.3 211 61.6
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.2e-46 190.3 283 49.1
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.8e-43 180.6 210 58.6
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-41 173.7 142 63.4
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-38 162.9 207 61.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.8e-38 162.9 104 80.8
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 4.9e-38 162.5 252 50.0
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 8.7e-35 151.8 316 44.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 3.4e-31 139.8 308 44.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.0e-30 138.3 179 56.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.9e-30 136.7 100 68.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.6e-28 129.4 330 43.3
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 3.3e-26 123.2 319 41.4
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.8e-25 119.4 84 72.6
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.1e-24 118.2 87 73.6
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.2e-23 114.8 211 53.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.9e-23 112.5 191 46.1
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 7.6e-23 112.1 88 68.2
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.9e-22 110.2 152 59.2
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 8.5e-22 108.6 342 38.6
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 4.2e-21 106.3 115 52.2
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 5.5e-21 105.9 78 69.2
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.9e-20 102.1 142 50.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.7e-18 95.1 67 71.6
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.7e-18 95.1 63 73.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.8e-16 90.9 111 48.6
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.7e-15 85.5 313 32.9
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 3.8e-14 83.2 304 38.8
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.3e-11 73.9 44 84.1
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.7e-09 66.6 117 50.4
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.8e-09 66.2 138 46.4
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 6.3e-09 65.9 127 39.4
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.4e-08 64.7 84 47.6
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 1.5e-07 61.2 44 75.0
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 2.2e-06 57.4 269 38.3


User provided reference genes

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