Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.0e-229 798.1 390 100.0
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 4.7e-190 667.9 396 83.8
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 2.9e-184 648.7 390 81.8
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.7e-171 606.3 388 79.6
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.5e-164 583.2 393 74.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.4e-164 581.6 395 73.2
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.2e-163 579.3 388 75.3
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-142 508.8 362 71.5
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 4.7e-134 481.9 380 64.7
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 6.4e-131 471.5 403 61.0
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 1.1e-130 470.7 386 64.2
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 9.2e-130 467.6 389 61.2
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 3.0e-128 462.6 386 63.7
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 4.7e-126 455.3 389 59.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 5.2e-125 451.8 392 59.9
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.7e-123 446.8 389 60.7
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 5.4e-122 441.8 391 58.8
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 9.3e-122 441.0 362 61.3
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-121 440.7 362 61.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.7e-120 436.8 386 57.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 2.3e-120 436.4 399 56.1
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 3.0e-120 436.0 395 58.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 5.1e-120 435.3 385 58.7
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 8.7e-120 434.5 402 55.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 1.9e-119 433.3 386 58.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.3e-119 432.6 317 70.3
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.6e-118 430.3 336 61.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 4.8e-118 428.7 386 56.2
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.1e-117 427.6 394 56.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 6.9e-117 424.9 385 56.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 2.6e-116 422.9 401 54.6
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 5.8e-116 421.8 406 54.9
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.3e-115 420.6 387 56.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.9e-115 419.5 393 56.0
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.9e-114 416.8 388 55.2
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 7.1e-114 414.8 385 55.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 9.3e-114 414.5 387 54.8
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 5.1e-112 408.7 385 56.1
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.9e-111 406.8 394 52.0
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.5e-108 395.6 390 52.1
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.5e-108 395.6 446 48.7
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.6e-108 394.8 384 53.4
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.7e-107 393.7 487 48.3
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.2e-107 393.3 385 53.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 2.9e-107 392.9 387 52.7
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 4.9e-107 392.1 382 50.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.9e-106 390.2 392 51.8
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.7e-105 386.3 387 52.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 7.9e-105 384.8 390 50.5
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.3e-103 379.4 340 55.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.6e-102 377.1 469 46.1
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.8e-102 376.3 410 49.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.4e-101 374.0 384 50.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.4e-101 373.2 384 51.3
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.4e-101 373.2 378 49.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 5.3e-101 372.1 388 52.1
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.0e-99 367.9 397 51.9
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 9.3e-98 361.3 416 50.2
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.1e-97 360.1 288 63.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 3.9e-96 355.9 363 49.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 3.9e-96 355.9 363 49.9
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 8.7e-96 354.8 362 50.0
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-95 354.4 363 49.6
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.1e-95 354.4 382 49.7
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 3.7e-94 349.4 364 49.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 4.8e-94 349.0 362 49.7
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 9.0e-93 344.7 279 65.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.9e-91 339.7 418 46.2
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 7.2e-90 335.1 387 46.8
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 3.5e-89 332.8 441 42.9
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 7.9e-89 331.6 294 56.5
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.1e-87 327.8 399 46.9
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 2.9e-83 313.2 268 61.6
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 5.0e-83 312.4 229 64.6
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.5e-83 312.0 405 44.7
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.5e-79 300.1 298 55.4
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 3.1e-77 293.1 299 53.5
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.2e-76 291.2 344 44.8
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 2.2e-75 287.0 390 40.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 4.7e-73 279.3 367 43.9
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.4e-72 277.7 288 51.7
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.8e-72 275.0 305 46.9
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.0e-71 273.9 289 52.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.0e-71 273.9 300 50.0
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 7.4e-71 271.9 213 63.4
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 5.9e-68 262.3 266 51.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.3e-67 261.2 282 50.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.3e-64 250.4 277 49.5
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.5e-63 247.7 288 44.1
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.5e-63 247.7 214 56.5
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.4e-61 240.4 377 40.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.5e-58 230.3 271 49.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 7.2e-58 228.8 191 57.1
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.6e-57 226.5 275 46.5
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.0e-56 223.4 267 46.8
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.1e-53 214.9 254 48.8
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.4e-53 213.8 254 48.4
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.1e-53 213.4 262 47.7
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 5.9e-52 209.1 252 48.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.2e-51 207.2 265 46.0
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.5e-51 205.7 253 48.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.5e-50 203.8 252 48.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.5e-50 203.8 252 48.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.5e-50 203.8 267 48.3
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.2e-49 201.4 253 48.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 3.6e-49 199.9 254 47.6
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 4.7e-49 199.5 285 39.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.4e-47 193.0 252 44.8
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 7.5e-47 192.2 252 47.2
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 7.5e-47 192.2 297 41.1
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 7.5e-47 192.2 252 44.4
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 9.8e-47 191.8 255 45.9
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.4e-45 187.2 252 45.6
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 7.0e-45 185.7 268 43.3
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.6e-44 184.5 221 48.9
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.0e-44 184.1 252 43.3
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.0e-44 184.1 254 44.9
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 3.5e-44 183.3 252 44.4
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 3.5e-44 183.3 157 61.8
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 4.5e-44 183.0 255 44.3
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 4.5e-44 183.0 252 45.2
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 4.5e-44 183.0 298 37.9
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.3e-43 181.4 255 43.9
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.7e-43 181.0 255 43.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 3.8e-43 179.9 255 43.5
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-40 171.4 213 46.9
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.3e-40 170.6 276 40.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.3e-38 164.9 213 42.7
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.8e-37 161.0 200 48.5
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.1e-37 159.8 129 64.3
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-36 158.3 214 44.4
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 6.6e-35 152.5 125 60.8
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-34 151.4 323 30.3
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 4.3e-34 149.8 153 52.9
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 4.4e-31 139.8 72 81.9
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 7.5e-31 139.0 128 57.0
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 7.0e-29 132.5 259 32.4
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 9.2e-29 132.1 64 87.5
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.6e-25 121.3 172 40.1
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.0e-23 114.4 295 28.1
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.3e-22 111.7 160 41.2
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 1.3e-14 85.1 83 55.4
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 3.8e-14 83.6 65 63.1
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 1.7e-11 74.7 137 35.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-11 74.7 104 41.3
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 5.1e-11 73.2 126 34.1
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.5e-10 70.9 130 40.8
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.8e-09 67.4 56 55.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 7.6e-07 59.3 83 39.8
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-06 58.5 80 40.0


User provided reference genes

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