Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 9.1e-184 646.7 320 100.0
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 3.6e-156 555.1 319 87.1
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 3.3e-149 531.9 312 84.0
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 3.1e-147 525.4 320 81.6
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 2.4e-144 515.8 317 80.1
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 3.3e-141 505.4 320 79.1
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 6.2e-140 501.1 318 78.0
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 3.6e-132 475.3 323 73.7
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 6.0e-127 458.0 318 72.0
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 8.1e-124 447.6 317 69.7
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 1.4e-123 446.8 319 68.7
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 2.4e-123 446.0 314 67.8
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 9.0e-123 444.1 313 69.3
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 9.0e-123 444.1 315 67.0
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 4.5e-122 441.8 308 71.1
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 4.5e-122 441.8 321 66.7
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.9e-121 439.1 328 67.4
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 1.9e-120 436.4 319 67.1
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 4.2e-120 435.3 316 65.8
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 4.6e-119 431.8 312 65.7
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 7.9e-119 431.0 321 64.8
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.5e-117 426.8 318 66.0
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 1.3e-116 423.7 313 62.3
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 2.1e-116 422.9 313 62.6
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 1.4e-115 420.2 317 65.6
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 9.9e-114 414.1 318 62.9
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 1.9e-112 409.8 363 58.1
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 1.2e-111 407.1 310 64.2
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 2.7e-111 406.0 323 63.5
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 6.0e-111 404.8 315 62.5
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 6.7e-110 401.4 314 61.8
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 2.5e-109 399.4 368 54.9
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.3e-109 399.1 287 65.9
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 5.6e-109 398.3 314 59.9
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 5.6e-109 398.3 313 60.7
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 4.8e-108 395.2 320 63.8
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 1.1e-107 394.0 316 60.1
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 1.4e-107 393.7 314 61.8
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 3.1e-107 392.5 333 60.1
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 7.6e-106 387.9 312 62.2
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-105 387.5 372 54.0
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.0e-105 387.5 372 54.0
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.2e-105 386.3 257 70.4
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 2.9e-105 386.0 320 59.4
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.1e-104 384.0 319 60.8
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.9e-104 383.3 371 55.0
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 4.2e-104 382.1 319 62.4
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 5.5e-104 381.7 221 86.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 3.5e-103 379.0 235 80.4
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 6.0e-103 378.3 374 52.7
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.3e-102 377.1 347 55.0
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 3.9e-102 375.6 320 59.7
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 3.9e-102 375.6 320 59.7
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 5.1e-102 375.2 312 59.6
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.5e-101 373.6 314 58.3
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 4.1e-99 365.5 314 58.9
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 5.3e-99 365.2 374 51.1
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 6.9e-99 364.8 276 62.7
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 2.0e-98 363.2 299 58.5
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 7.6e-98 361.3 315 58.1
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.0e-97 360.9 318 57.9
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.9e-96 356.7 314 57.0
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 3.2e-96 355.9 317 54.9
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 4.2e-96 355.5 314 57.3
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 5.5e-96 355.1 321 55.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 9.3e-96 354.4 325 54.2
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 2.7e-95 352.8 315 55.9
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 3.6e-95 352.4 320 55.9
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 6.1e-95 351.7 291 59.8
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 3.0e-94 349.4 314 55.7
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 5.1e-94 348.6 319 58.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.9e-93 346.7 281 60.9
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 7.4e-93 344.7 328 54.9
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 1.6e-92 343.6 321 55.5
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 2.8e-92 342.8 325 54.2
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.7e-92 342.4 299 57.9
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 5.3e-91 338.6 311 53.7
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 6.9e-91 338.2 318 54.7
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 1.2e-90 337.4 325 53.5
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 5.9e-90 335.1 315 54.3
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 2.2e-89 333.2 245 65.3
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.1e-88 330.9 291 57.0
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 1.1e-88 330.9 279 59.5
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.6e-87 325.5 308 52.3
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 4.6e-87 325.5 308 52.3
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.8e-83 313.5 273 56.4
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 3.1e-83 312.8 335 49.9
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 4.1e-83 312.4 229 65.1
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 4.1e-83 312.4 227 68.3
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 2.9e-81 306.2 314 50.6
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 3.8e-81 305.8 327 48.0
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 3.6e-79 299.3 193 68.9
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.4e-78 297.4 272 55.9
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 5.2e-78 295.4 195 69.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 3.3e-77 292.7 318 49.7
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 7.4e-77 291.6 319 49.2
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 2.2e-76 290.0 228 62.3
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 1.4e-75 287.3 225 62.2
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 2.0e-74 283.5 307 48.5
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.3e-73 280.8 239 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 2.9e-73 279.6 316 48.4
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 6.5e-73 278.5 211 62.1
Ca_21103_v3 Cicer arietinum L. HOM05D006152 ORTHO05D008137 1.1e-72 277.7 222 67.6
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.3e-70 270.0 231 58.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.0e-70 269.6 307 46.3
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 1.7e-65 253.8 321 46.1
Potri.006G188200 Populus trichocarpa HOM05D006152 ORTHO05D008137 6.5e-65 251.9 183 68.3
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.5e-64 250.8 320 43.1
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 3.2e-64 249.6 321 42.4
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 1.6e-63 247.3 314 45.9
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 4.1e-59 232.6 152 71.7
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 4.1e-59 232.6 170 62.4
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 2.8e-55 219.9 263 46.4
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 3.7e-52 209.5 282 41.1
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.7e-49 200.7 143 66.4
ClCG11G003570 Citrullus lanatus HOM05D006152 ORTHO05D008137 3.8e-49 199.5 180 57.2
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 8.6e-49 198.4 134 66.4
FAN28G1911 Fragaria x ananassa HOM05D006152 ORTHO05D008137 3.0e-41 173.3 139 61.9
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.2e-39 167.9 125 62.4
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 4.7e-39 166.0 164 53.0
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 2.2e-36 157.1 102 73.5
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 4.4e-29 132.9 88 70.5
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 2.9e-28 130.2 75 77.3
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 2.9e-28 130.2 88 67.0
Oeu028814.1 Olea europaea HOM05D006152 ORTHO05D008137 4.1e-27 126.3 177 40.7
TAR383G0486 Trochodendron aralioides HOM05D006152 ORTHO05D008137 2.5e-24 117.1 101 58.4
Potri.018G111500 Populus trichocarpa HOM05D006152 ORTHO05D008137 1.0e-17 95.1 92 53.3
Sc04g0006660 Simmondsia chinensis HOM05D006152 ORTHO05D008137 1.5e-16 91.3 79 54.4
Sc08g0005240 Simmondsia chinensis HOM05D006152 ORTHO05D008137 3.6e-15 86.7 104 49.0
Medtr4g015670 Medicago truncatula HOM05D006152 ORTHO05D008137 2.9e-12 77.0 71 62.0
SMO356G0211 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 1.4e-11 74.7 66 51.5
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 7.1e-11 72.4 60 55.0
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 5.1e-09 66.2 44 68.2
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 8.7e-09 65.5 39 71.8
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 8.7e-09 65.5 39 71.8
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 8.7e-09 65.5 39 71.8


User provided reference genes

Program Settings