Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6490 Trifolium pratense HOM05D003294 ORTHO05D004060 3.2e-73 280.0 362 100.0
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 1.5e-62 244.6 146 97.3
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 8.3e-61 238.8 132 93.2
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 3.1e-60 236.9 132 93.9
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 3.1e-60 236.9 132 91.7
Medtr1g033100 Medicago truncatula HOM05D003294 ORTHO05D004060 5.0e-58 229.6 132 90.9
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 1.8e-52 211.1 132 79.5
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 3.8e-50 203.4 132 83.3
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 5.0e-50 203.0 118 86.4
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 5.0e-50 203.0 118 85.6
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 9.5e-49 198.7 118 82.2
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 1.2e-48 198.4 118 83.1
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 1.6e-48 198.0 118 81.4
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 1.6e-48 198.0 148 84.5
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 4.7e-48 196.4 132 74.2
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 6.1e-48 196.1 109 86.2
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 8.0e-48 195.7 118 80.5
Phvul.007G084600 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 2.6e-46 190.7 110 84.5
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 2.6e-46 190.7 120 77.5
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 2.9e-45 187.2 132 75.8
Ca_13008_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 1.8e-44 184.5 96 92.7
Ca_13010_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 5.9e-43 179.5 96 89.6
Ca_13009_v3 Cicer arietinum L. HOM05D003294 ORTHO05D004060 2.5e-41 174.1 96 87.5
Lalb_Chr21g0307691 Lupinus albus HOM05D003294 ORTHO05D004060 7.3e-41 172.6 100 81.0
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 4.0e-39 166.8 116 73.3
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.7e-37 161.4 113 73.5
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 3.7e-37 160.2 107 74.8
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 6.4e-37 159.5 113 70.8
Atru.chr3.1652 Acer truncatum HOM05D003294 ORTHO05D004060 1.1e-36 158.7 113 70.8
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 1.9e-36 157.9 119 68.9
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 3.2e-36 157.1 98 76.5
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 3.2e-36 157.1 98 76.5
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.2e-35 155.2 113 70.8
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.6e-35 154.8 121 69.4
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 2.0e-35 154.5 112 69.6
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.7e-35 154.1 113 69.0
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 3.5e-35 153.7 112 68.8
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 3.5e-35 153.7 121 69.4
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 3.5e-35 153.7 113 67.3
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 4.6e-35 153.3 121 66.9
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 1.0e-34 152.1 112 68.8
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 1.0e-34 152.1 112 68.8
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 1.0e-34 152.1 112 68.8
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.3e-34 151.8 121 66.9
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 1.3e-34 151.8 121 66.9
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.3e-34 151.8 121 66.9
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.3e-34 151.8 113 67.3
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.3e-34 151.8 113 67.3
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 2.3e-34 151.0 113 67.3
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 2.3e-34 151.0 113 67.3
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 3.0e-34 150.6 112 67.9
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 3.0e-34 150.6 146 71.9
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 3.9e-34 150.2 112 67.9
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 3.9e-34 150.2 111 68.5
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 3.9e-34 150.2 112 67.9
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 3.9e-34 150.2 112 67.9
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 3.9e-34 150.2 121 66.9
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 5.0e-34 149.8 121 66.9
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 6.6e-34 149.4 120 66.7
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 8.6e-34 149.1 112 67.0
BraA03t11617Z Brassica rapa HOM05D003294 ORTHO05D004060 8.6e-34 149.1 112 67.0
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 8.6e-34 149.1 121 67.8
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 8.6e-34 149.1 116 69.0
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 8.6e-34 149.1 114 68.4
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 8.6e-34 149.1 113 66.4
arahy.Tifrunner.gnm1.ann1.3MFN7L Arachis hypogaea HOM05D003294 ORTHO05D004060 1.1e-33 148.7 99 73.7
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 1.1e-33 148.7 121 66.1
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 1.1e-33 148.7 114 69.3
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.1e-33 148.7 115 67.8
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 1.5e-33 148.3 112 67.9
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 1.9e-33 147.9 113 66.4
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 2.5e-33 147.5 112 67.9
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 2.5e-33 147.5 121 66.1
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 2.5e-33 147.5 124 66.1
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 3.3e-33 147.1 121 65.3
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 4.3e-33 146.7 110 68.2
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 4.3e-33 146.7 121 65.3
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 5.6e-33 146.4 113 66.4
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 5.6e-33 146.4 121 66.9
arahy.Tifrunner.gnm1.ann1.067A10 Arachis hypogaea HOM05D003294 ORTHO05D004060 7.3e-33 146.0 99 72.7
BraA05t19350Z Brassica rapa HOM05D003294 ORTHO05D004060 7.3e-33 146.0 119 66.4
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 7.3e-33 146.0 121 66.1
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 9.5e-33 145.6 110 66.4
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 1.2e-32 145.2 121 64.5
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 1.2e-32 145.2 114 68.4
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 1.6e-32 144.8 113 66.4
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 1.6e-32 144.8 120 65.8
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 1.6e-32 144.8 121 67.8
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.1e-32 144.4 113 66.4
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 2.1e-32 144.4 119 65.5
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 2.1e-32 144.4 115 67.0
BraA04t18713Z Brassica rapa HOM05D003294 ORTHO05D004060 2.8e-32 144.1 119 65.5
CARHR169650 Cardamine hirsuta HOM05D003294 ORTHO05D004060 2.8e-32 144.1 110 66.4
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 2.8e-32 144.1 121 65.3
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 3.6e-32 143.7 122 62.3
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 4.7e-32 143.3 114 67.5
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 4.7e-32 143.3 104 70.2
arahy.Tifrunner.gnm1.ann1.U55V76 Arachis hypogaea HOM05D003294 ORTHO05D004060 8.1e-32 142.5 95 73.7
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 1.1e-31 142.1 121 64.5
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.1e-31 142.1 113 64.6
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 1.4e-31 141.7 114 66.7
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 1.8e-31 141.4 113 63.7
arahy.Tifrunner.gnm1.ann1.MNWX4W Arachis hypogaea HOM05D003294 ORTHO05D004060 1.8e-31 141.4 95 72.6
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.8e-31 141.4 113 63.7
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.8e-31 141.4 113 64.6
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.3e-31 141.0 121 62.8
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 3.1e-31 140.6 112 64.3
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 4.0e-31 140.2 115 66.1
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 4.0e-31 140.2 109 66.1
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 5.2e-31 139.8 102 70.6
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 5.2e-31 139.8 102 70.6
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.5e-30 138.3 121 62.8
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 2.0e-30 137.9 120 59.2
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 2.6e-30 137.5 113 62.8
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.4e-30 137.1 113 61.9
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 4.4e-30 136.7 121 60.3
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 5.8e-30 136.3 123 63.4
arahy.Tifrunner.gnm1.ann1.AM9QWL Arachis hypogaea HOM05D003294 ORTHO05D004060 7.5e-30 136.0 110 64.5
SGA_v2.0_scaffold406G51043 Striga asiatica HOM05D003294 ORTHO05D004060 9.9e-30 135.6 116 65.5
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 1.3e-29 135.2 120 60.8
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.3e-29 135.2 120 60.8
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.3e-29 135.2 120 60.8
Peaxi162Scf00323g00616 Petunia axillaris HOM05D003294 ORTHO05D004060 1.3e-29 135.2 119 59.7
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.7e-29 134.8 114 64.0
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 1.7e-29 134.8 120 60.0
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 2.2e-29 134.4 119 60.5
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 3.7e-29 133.7 121 62.0
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 3.7e-29 133.7 123 63.4
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 6.4e-29 132.9 113 61.9
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 6.4e-29 132.9 113 61.9
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 8.3e-29 132.5 112 63.4
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.1e-28 132.1 102 68.6
Nitab4.5_0004568g0020 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.1e-28 132.1 121 57.0
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 1.9e-28 131.3 125 60.8
Solyc12g150131.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.9e-28 131.3 114 62.3
BcaB01g03408 Brassica carinata HOM05D003294 ORTHO05D004060 2.4e-28 131.0 96 68.8
HanXRQChr14g0437071 Helianthus annuus HOM05D003294 ORTHO05D004060 4.1e-28 130.2 126 59.5
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 5.4e-28 129.8 119 59.7
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 5.4e-28 129.8 124 58.1
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 5.4e-28 129.8 124 58.1
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 5.4e-28 129.8 106 62.3
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 1.2e-27 128.6 109 65.1
Haze_00702 Corylus avellana HOM05D003294 ORTHO05D004060 1.2e-27 128.6 99 69.7
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.2e-27 128.6 112 58.0
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.2e-27 128.6 112 58.0
MBI08_g05500_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.2e-27 128.6 113 61.1
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 2.1e-27 127.9 112 58.0
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 3.5e-27 127.1 98 69.4
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 3.9e-26 123.6 103 63.1
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 5.1e-26 123.2 114 58.8
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 6.6e-26 122.9 119 58.0
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.5e-25 120.9 113 58.4
Lj2g0020959 Lotus japonicus HOM05D003294 ORTHO05D004060 4.3e-25 120.2 86 70.9
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 1.2e-24 118.6 125 59.2
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.1e-24 117.9 104 59.6
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 2.1e-24 117.9 120 58.3
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 2.1e-24 117.9 113 59.3
RcHm_v2.0_Chr4g0408821 Rosa chinensis HOM05D003294 ORTHO05D004060 2.8e-24 117.5 99 62.6
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 3.6e-24 117.1 120 54.2
Nn7g38030 Nelumbo nucifera HOM05D003294 ORTHO05D004060 4.7e-24 116.7 120 51.7
Hund06534 Selenicereus undatus HOM05D003294 ORTHO05D004060 1.1e-23 115.5 121 52.1
Sc10g0006170 Simmondsia chinensis HOM05D003294 ORTHO05D004060 2.4e-23 114.4 104 58.7
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 1.2e-22 112.1 118 57.6
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 1.2e-22 112.1 127 57.5
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 4.4e-22 110.2 127 56.7
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.2e-21 107.8 97 58.8
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 3.8e-21 107.1 127 55.9
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 6.4e-21 106.3 104 55.8
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 8.4e-21 105.9 76 67.1
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 1.9e-20 104.8 116 53.4
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 4.1e-20 103.6 121 48.8
PSO478G2289 Papaver somniferum HOM05D003294 ORTHO05D004060 4.1e-20 103.6 121 50.4
SEGI_35656 Sequoiadendron giganteum HOM05D003294 ORTHO05D004060 1.3e-18 98.6 110 50.9
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 3.1e-15 87.4 65 64.6
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 1.2e-14 85.5 79 58.2
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 2.2e-13 81.3 118 44.9
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.3e-10 71.2 80 50.0
Aqoxy1G02134 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 2.1e-08 64.7 54 59.3
MBI11_g33754_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.8e-08 64.3 56 58.9
Zm00001eb144520 Zea mays HOM05D003294 ORTHO05D004060 4.8e-08 63.5 121 38.8
Aqoxy7G03524 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 1.5e-06 58.5 104 38.5
Lj2g0025231 Lotus japonicus HOM05D003294 ORTHO05D004060 3.4e-06 57.4 34 79.4


User provided reference genes

Program Settings