Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 2.5e-56 221.9 111 100.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.1e-40 169.9 91 91.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.0e-38 161.4 92 88.0
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 7.1e-35 150.6 91 82.4
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 7.9e-34 147.1 98 78.6
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.3e-33 145.6 91 80.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 3.9e-33 144.8 91 81.3
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 4.5e-29 131.3 91 75.8
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 9.9e-29 130.2 91 74.7
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.3e-28 129.8 91 74.7
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.8e-28 128.3 91 74.7
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 6.4e-28 127.5 86 76.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 6.4e-28 127.5 86 76.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 6.4e-28 127.5 91 72.5
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.9e-27 125.9 91 72.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.2e-27 125.2 91 72.5
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.2e-27 125.2 91 72.5
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 3.2e-27 125.2 91 72.5
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 5.5e-27 124.4 86 74.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 9.3e-27 123.6 102 65.7
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 9.3e-27 123.6 91 71.4
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.2e-26 123.2 91 71.4
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-26 123.2 91 71.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-26 123.2 91 71.4
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.1e-26 122.5 86 72.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 2.7e-26 122.1 91 71.4
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 4.6e-26 121.3 102 60.8
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.0e-25 120.2 103 63.1
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.3e-25 119.0 100 64.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 3.0e-25 118.6 80 80.0
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 6.7e-25 117.5 95 65.3
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.7e-25 117.1 100 63.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.9e-24 115.9 84 72.6
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 4.3e-24 114.8 86 67.4
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 7.4e-24 114.0 86 66.3
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 7.4e-24 114.0 88 69.3
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 7.4e-24 114.0 86 66.3
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.1e-23 112.5 100 62.0
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 2.1e-23 112.5 88 68.2
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 3.7e-23 111.7 86 65.1
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.7e-23 111.7 88 68.2
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 3.7e-23 111.7 88 68.2
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 3.7e-23 111.7 88 68.2
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.7e-23 111.7 86 67.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 3.7e-23 111.7 86 67.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 4.8e-23 111.3 84 70.2
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 4.8e-23 111.3 86 67.4
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 4.8e-23 111.3 83 68.7
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 8.2e-23 110.5 86 64.0
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 8.2e-23 110.5 88 64.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.1e-22 110.2 86 64.0
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.1e-22 110.2 86 64.0
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.1e-22 110.2 86 67.4
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.4e-22 109.8 100 60.0
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.4e-22 109.0 84 67.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.1e-22 108.6 84 67.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.0e-22 108.2 84 66.7
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.3e-22 107.8 84 66.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 5.3e-22 107.8 84 67.9
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 5.3e-22 107.8 84 67.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.3e-22 107.8 87 66.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 6.9e-22 107.5 84 66.7
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 9.0e-22 107.1 84 67.9
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 9.0e-22 107.1 100 59.0
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.5e-21 106.3 85 64.7
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.5e-21 106.3 108 53.7
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.0e-21 105.9 84 65.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 2.0e-21 105.9 84 63.1
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 2.0e-21 105.9 81 67.9
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 2.6e-21 105.5 84 64.3
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.4e-21 105.1 96 59.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.4e-21 105.1 84 65.5
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 4.5e-21 104.8 84 67.9
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.5e-21 104.8 84 67.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.0e-20 103.6 96 58.3
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.3e-20 103.2 84 64.3
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.3e-20 103.2 86 62.8
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 2.2e-20 102.4 96 58.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.9e-20 102.1 83 63.9
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 4.9e-20 101.3 84 63.1
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 6.5e-20 100.9 86 60.5
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.5e-20 100.9 84 63.1
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.1e-19 100.1 86 61.6
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.1e-19 100.1 84 63.1
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.4e-19 99.8 84 63.1
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.9e-19 99.4 84 63.1
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.9e-19 99.4 84 63.1
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.5e-19 99.0 86 62.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 3.2e-19 98.6 86 58.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.2e-19 98.2 88 60.2
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.2e-19 98.2 85 63.5
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 4.2e-19 98.2 85 63.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.2e-19 98.2 84 61.9
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 9.3e-19 97.1 95 56.8
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 1.6e-18 96.3 86 57.0
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.6e-18 96.3 84 60.7
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.1e-18 95.9 84 60.7
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.1e-18 95.9 84 59.5
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 4.6e-18 94.7 84 60.7
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 4.6e-18 94.7 84 60.7
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.0e-18 94.4 83 60.2
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 6.0e-18 94.4 86 61.6
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.0e-17 93.6 74 66.2
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.8e-17 92.8 84 60.7
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 3.0e-17 92.0 85 56.5
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 3.3e-16 88.6 88 53.4
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.3e-15 84.3 75 58.7
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.1e-14 81.6 78 57.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.5e-13 79.7 74 56.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.5e-13 79.7 86 48.8
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 4.5e-13 78.2 84 51.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.5e-11 72.4 70 60.0
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.2e-10 70.1 88 44.3
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.4e-09 66.6 91 44.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.9e-08 62.8 60 56.7


User provided reference genes

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