Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6486 Trifolium pratense HOM05D009824 ORTHO05D012089 1.8e-53 212.2 100 100.0
TPR.G6428 Trifolium pratense HOM05D009824 ORTHO05D012089 6.2e-30 134.0 100 71.0
ClCG03G017300 Citrullus lanatus HOM05D009824 ORTHO05D010344 4.3e-15 84.7 84 46.4
Ciclev10018043m.g Citrus clementina HOM05D009824 ORTHO05D012089 5.6e-15 84.3 72 55.6
Lalb_Chr22g0356681 Lupinus albus HOM05D009824 ORTHO05D012089 2.1e-14 82.4 70 57.1
Atru.chr10.1415 Acer truncatum HOM05D009824 ORTHO05D012913 1.4e-13 79.7 71 53.5
Medtr2g090725 Medicago truncatula HOM05D009824 ORTHO05D012089 6.9e-13 77.4 75 57.3
Lalb_Chr04g0260751 Lupinus albus HOM05D009824 ORTHO05D012089 3.4e-12 75.1 56 60.7
Prupe.3G207900 Prunus persica HOM05D009824 ORTHO05D012089 7.6e-12 73.9 76 50.0
Lalb_Chr22g0356671 Lupinus albus HOM05D009824 ORTHO05D012089 1.0e-11 73.6 70 50.0
Lalb_Chr22g0356691 Lupinus albus HOM05D009824 ORTHO05D012089 1.0e-11 73.6 70 50.0
Glyma.20G066000 Glycine max HOM05D009824 ORTHO05D012089 6.5e-11 70.9 70 51.4
Sabra13G0115000 Salix brachista HOM05D009824 ORTHO05D012089 6.5e-11 70.9 80 45.0
Lj3g0010521 Lotus japonicus HOM05D009824 ORTHO05D012089 1.1e-10 70.1 73 49.3
CsaV3_3G023270 Cucumis sativus L. HOM05D009824 ORTHO05D012089 1.9e-10 69.3 84 46.4
Medtr2g090625 Medicago truncatula HOM05D009824 ORTHO05D012089 7.1e-10 67.4 77 54.5
ClCG03G012270 Citrullus lanatus HOM05D009824 ORTHO05D012089 9.3e-10 67.0 70 42.9
AL4G28390 Arabidopsis lyrata HOM05D010425 ORTHO05D014400 1.2e-09 66.6 70 44.3
Lj3g0019093 Lotus japonicus HOM05D009824 ORTHO05D012089 2.1e-09 65.9 76 48.7
arahy.Tifrunner.gnm1.ann1.D6BKB3 Arachis hypogaea HOM05D039930 ORTHO05D031512 2.7e-09 65.5 52 53.8
Cpa.g.sc183.18 Carica papaya HOM05D009824 ORTHO05D012089 2.7e-09 65.5 70 45.7
Sabra19G0113500 Salix brachista HOM05D000973 ORTHO05D000652 3.5e-09 65.1 77 40.3
BraA10t45129Z Brassica rapa HOM05D056849 ORTHO05D011961 4.6e-09 64.7 53 54.7
Thhalv10012049m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 4.6e-09 64.7 72 44.4
Thhalv10011947m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 6.0e-09 64.3 68 44.1
AL4G30810 Arabidopsis lyrata HOM05D010425 ORTHO05D014400 2.3e-08 62.4 70 41.4
CARHR126820 Cardamine hirsuta HOM05D010425 ORTHO05D014400 3.0e-08 62.0 70 41.4
Glyma.13G294734 Glycine max HOM05D009824 ORTHO05D012089 3.0e-08 62.0 70 44.3
Potri.019G102400 Populus trichocarpa HOM05D000973 ORTHO05D012089 3.9e-08 61.6 80 40.0
BolC9t59898H Brassica oleracea HOM05D056849 ORTHO05D011961 8.7e-08 60.5 52 53.8
Thhalv10012096m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 8.7e-08 60.5 70 44.3
Thhalv10012132m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 8.7e-08 60.5 48 54.2
Thhalv10012318m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 8.7e-08 60.5 48 54.2
AL2G15970 Arabidopsis lyrata HOM05D010069 ORTHO05D011961 1.1e-07 60.1 60 45.0
AT2G32885 Arabidopsis thaliana HOM05D010425 ORTHO05D014400 1.1e-07 60.1 70 40.0
arahy.Tifrunner.gnm1.ann1.RPP3JL Arachis hypogaea HOM05D039930 ORTHO05D031512 1.1e-07 60.1 57 49.1
TPR.G231 Trifolium pratense HOM05D017706 ORTHO05D020286 1.1e-07 60.1 81 48.1
AT2G34825 Arabidopsis thaliana HOM05D010425 ORTHO05D014400 1.5e-07 59.7 69 40.6
Carub.0004s1429 Capsella rubella HOM05D010425 ORTHO05D014400 1.9e-07 59.3 70 38.6
Thhalv10024045m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 1.9e-07 59.3 67 44.8
Potri.018G007500 Populus trichocarpa HOM05D027090 ORTHO05D011079 2.5e-07 58.9 68 47.1
Potri.018G007701 Populus trichocarpa HOM05D027090 ORTHO05D011079 2.5e-07 58.9 68 47.1
Thhalv10023902m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 3.3e-07 58.5 74 43.2
Sabra18G0014900 Salix brachista HOM05D002483 ORTHO05D003728 3.3e-07 58.5 46 60.9
Potri.018G007800 Populus trichocarpa HOM05D027090 ORTHO05D011079 4.3e-07 58.2 67 47.8
AL1G36810 Arabidopsis lyrata HOM05D008965 ORTHO05D031329 5.7e-07 57.8 78 47.4
Carub.0002s0682 Capsella rubella HOM05D010069 ORTHO05D011961 5.7e-07 57.8 62 41.9
Carub.0002s0716 Capsella rubella HOM05D010069 ORTHO05D011961 5.7e-07 57.8 60 41.7
TPR.G29488 Trifolium pratense HOM05D017706 ORTHO05D020286 5.7e-07 57.8 81 48.1
TPR.G571 Trifolium pratense HOM05D017706 ORTHO05D020286 7.4e-07 57.4 83 44.6
Carub.0002s0714 Capsella rubella HOM05D010069 ORTHO05D011961 9.6e-07 57.0 60 41.7
Carub.0002s0715 Capsella rubella HOM05D010069 ORTHO05D011961 9.6e-07 57.0 60 41.7
Carub.0002s0717 Capsella rubella HOM05D010069 ORTHO05D011961 9.6e-07 57.0 60 41.7
Haze_06902 Corylus avellana HOM05D011987 ORTHO05D012913 1.3e-06 56.6 77 44.2
Thhalv10002825m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 1.3e-06 56.6 44 54.5
arahy.Tifrunner.gnm1.ann1.PNS329 Arachis hypogaea HOM05D039930 ORTHO05D031512 2.1e-06 55.8 73 41.1
Aa31LG2G9270 Aethionema arabicum HOM05D008190 ORTHO05D010344 2.8e-06 55.5 70 40.0
Manes.13G061750 Manihot esculenta HOM05D009824 ORTHO05D012089 2.8e-06 55.5 72 37.5
Haze_06903 Corylus avellana HOM05D011987 ORTHO05D012913 4.8e-06 54.7 77 37.7
Thhalv10023965m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 4.8e-06 54.7 70 41.4
Medtr2g040040 Medicago truncatula HOM05D017706 ORTHO05D020286 8.2e-06 53.9 82 41.5


User provided reference genes

Program Settings