Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 7.8e-108 394.0 233 100.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 5.6e-90 334.7 233 76.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.9e-86 321.6 238 83.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 2.3e-83 312.8 234 74.4
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.9e-82 309.7 225 83.1
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.6e-76 290.0 235 68.1
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 1.3e-75 287.0 234 80.8
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 3.0e-75 285.8 227 69.2
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.6e-73 278.9 235 64.7
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.8e-72 276.6 234 65.0
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 3.2e-69 265.8 276 55.1
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.2e-69 265.4 235 63.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 1.1e-61 240.7 240 57.1
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.2e-61 238.8 240 55.8
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.3e-59 233.0 234 54.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.9e-59 232.3 234 55.1
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.3e-58 229.2 229 55.0
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 7.4e-58 228.0 242 57.0
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.1e-57 226.5 234 54.3
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.8e-57 226.1 234 53.4
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.8e-57 226.1 234 54.7
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.1e-56 222.6 234 58.1
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 9.0e-56 221.1 231 53.7
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.2e-55 220.7 234 54.7
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.5e-55 220.3 234 53.8
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.0e-55 219.9 250 52.4
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.0e-55 219.9 247 53.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.0e-55 219.9 234 53.4
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.4e-55 219.2 234 53.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.4e-55 219.2 229 56.3
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.8e-55 218.4 234 53.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.3e-54 217.2 234 56.8
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.3e-54 217.2 234 52.1
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.7e-54 216.9 240 52.9
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 2.9e-54 216.1 234 53.4
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.9e-54 216.1 234 54.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 3.8e-54 215.7 234 54.7
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 6.4e-54 214.9 234 53.8
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.4e-53 213.8 234 59.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.4e-53 213.8 231 52.8
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 4.2e-53 212.2 216 56.0
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-53 212.2 234 53.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 5.5e-53 211.8 236 54.7
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.5e-53 211.8 237 52.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.1e-53 211.5 236 53.0
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-52 210.7 230 53.0
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-52 210.3 235 52.8
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-52 209.9 235 52.8
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.7e-52 209.5 232 54.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.6e-52 208.8 230 52.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.0e-52 208.4 235 52.3
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.0e-52 208.4 234 60.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.1e-51 205.3 220 51.8
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.1e-50 204.1 232 54.7
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.1e-50 204.1 196 58.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.9e-50 203.4 225 52.9
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.3e-50 202.2 243 50.6
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 7.4e-50 201.4 232 52.2
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 7.4e-50 201.4 199 55.3
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 9.6e-50 201.1 136 77.9
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.1e-49 199.9 187 58.3
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.8e-49 199.5 238 50.8
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 4.8e-49 198.7 238 50.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.1e-48 197.6 226 52.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.1e-48 197.6 231 50.6
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.4e-48 197.2 216 50.9
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.4e-48 196.4 191 56.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.4e-48 196.4 191 56.5
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.4e-48 196.4 241 49.4
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.1e-48 196.1 210 52.9
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.0e-48 195.7 220 51.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 5.3e-48 195.3 208 52.9
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 5.3e-48 195.3 191 56.5
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.2e-47 194.1 234 50.9
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.2e-47 194.1 245 49.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.5e-47 193.7 234 51.3
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.5e-47 193.7 242 49.6
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-47 193.0 232 49.6
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.4e-47 192.6 191 56.0
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.4e-47 192.6 242 49.2
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 5.8e-47 191.8 139 71.9
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.7e-46 190.3 233 50.6
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.2e-46 189.9 218 50.5
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-46 189.9 235 54.9
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.9e-46 189.5 139 71.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.5e-46 188.3 226 50.4
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 6.5e-46 188.3 226 50.4
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 8.4e-46 188.0 139 72.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.4e-45 187.2 139 68.3
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.5e-45 186.4 191 53.9
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 2.5e-45 186.4 204 52.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 5.5e-45 185.3 236 51.3
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 5.5e-45 185.3 242 59.1
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.6e-44 183.7 233 49.8
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.1e-44 183.3 236 49.6
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 2.7e-44 183.0 207 49.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 6.0e-44 181.8 191 51.3
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 6.0e-44 181.8 236 57.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.3e-43 180.6 281 43.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-43 180.6 139 69.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.8e-43 180.3 191 53.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.0e-43 179.5 196 54.6
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 3.0e-43 179.5 138 69.6
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.1e-43 178.7 196 52.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 5.1e-43 178.7 236 48.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 8.7e-43 177.9 258 48.1
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.8e-41 172.9 234 47.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.8e-41 172.9 174 55.2
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 3.7e-41 172.6 253 44.3
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 3.7e-41 172.6 127 70.1
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.7e-41 172.6 133 69.2
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.3e-41 171.8 194 51.0
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.4e-40 170.6 225 48.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.4e-40 170.6 194 53.1
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 5.3e-40 168.7 225 46.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.2e-39 167.5 235 47.2
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.5e-39 167.2 248 43.5
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.0e-39 166.8 214 47.2
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.4e-39 166.0 208 48.6
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 5.9e-39 165.2 210 47.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 7.6e-39 164.9 210 46.7
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.3e-38 164.1 207 46.9
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.7e-38 163.7 210 46.2
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.7e-38 163.7 210 46.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.7e-38 163.7 139 64.0
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.2e-38 163.3 126 65.1
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 2.9e-38 162.9 240 43.3
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.9e-38 162.9 228 46.1
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 3.8e-38 162.5 136 62.5
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 6.5e-38 161.8 208 47.6
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.5e-38 161.8 209 46.9
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 1.4e-37 160.6 96 82.3
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.2e-36 157.5 195 46.7
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 4.6e-36 155.6 203 45.3
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.6e-36 155.6 102 74.5
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 4.6e-36 155.6 205 49.3
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 6.1e-36 155.2 199 48.7
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 7.9e-36 154.8 132 62.1
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.3e-35 154.1 187 51.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-35 153.7 118 67.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.1e-35 152.1 102 67.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.1e-34 151.0 101 74.3
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 4.3e-34 149.1 101 70.3
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-33 146.7 211 43.1
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-33 146.7 115 67.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.4e-32 143.3 120 62.5
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.4e-32 143.3 102 68.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.4e-32 143.3 95 72.6
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 6.9e-32 141.7 155 54.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 9.1e-32 141.4 127 60.6
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.2e-31 141.0 98 72.4
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.7e-30 137.1 88 73.9
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.7e-30 137.1 88 73.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 8.5e-30 134.8 195 44.1
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 8.8e-27 124.8 186 44.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.5e-26 124.0 79 74.7
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.3e-26 122.9 84 65.5
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.7e-20 103.2 164 42.1
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.8e-19 100.5 89 61.8
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 8.2e-17 91.7 84 48.8
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 3.1e-16 89.7 51 84.3
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.1e-16 89.4 54 81.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 8.0e-12 75.1 99 41.4
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 6.7e-11 72.0 233 31.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 8.8e-11 71.6 77 49.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 3.3e-10 69.7 40 80.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 4.1e-08 62.8 41 70.7


User provided reference genes

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