Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 0.0e+00 1075.5 578 100.0
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 7.0e-251 870.5 542 81.4
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.1e-243 846.7 544 81.4
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 1.5e-240 836.3 542 79.0
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 9.9e-221 770.4 544 73.0
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 1.6e-218 763.1 542 72.7
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 8.6e-217 757.3 542 72.1
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.9e-216 756.1 542 70.8
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 2.2e-212 742.7 548 71.7
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 5.3e-206 721.5 542 70.3
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 4.3e-200 701.8 568 66.9
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 4.0e-198 695.3 568 66.5
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 3.3e-184 649.0 571 60.4
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.8e-182 643.3 564 60.3
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.9e-180 636.0 565 58.8
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 3.2e-179 632.5 566 58.8
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 5.5e-179 631.7 559 59.2
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 3.6e-178 629.0 512 63.7
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 6.1e-178 628.2 553 60.4
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 6.9e-174 614.8 563 58.4
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 2.0e-173 613.2 565 58.2
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 1.1e-171 607.4 557 58.5
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 1.9e-171 606.7 530 59.2
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 2.5e-171 606.3 571 56.4
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 2.5e-171 606.3 537 58.8
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 5.5e-171 605.1 534 61.8
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 5.5e-171 605.1 507 63.1
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 9.4e-171 604.4 522 60.9
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 1.2e-170 604.0 521 61.0
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.2e-170 604.0 573 56.9
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 6.1e-170 601.7 542 59.4
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 3.9e-169 599.0 565 55.4
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 8.8e-169 597.8 512 60.0
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 8.8e-169 597.8 570 57.7
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 7.4e-168 594.7 570 56.8
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.7e-167 593.6 560 56.4
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 1.7e-167 593.6 549 59.2
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 2.8e-167 592.8 559 55.3
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 4.8e-167 592.0 555 56.0
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 8.2e-167 591.3 568 55.3
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 2.4e-166 589.7 565 56.3
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 4.1e-166 589.0 549 59.6
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 1.5e-165 587.0 559 54.7
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 1.7e-164 583.6 559 54.4
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 5.0e-164 582.0 562 57.3
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 6.5e-164 581.6 566 54.9
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 6.5e-164 581.6 562 54.6
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 8.5e-164 581.3 563 55.6
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 3.2e-163 579.3 536 60.1
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 3.2e-163 579.3 567 55.4
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 4.2e-163 578.9 567 55.4
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.2e-162 577.4 573 54.1
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 1.2e-162 577.4 554 56.0
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.2e-162 577.4 517 59.0
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 2.1e-162 576.6 539 57.1
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 3.6e-162 575.9 532 58.1
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.7e-162 575.5 584 53.4
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.8e-161 573.5 535 58.5
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 2.3e-161 573.2 545 56.7
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.0e-161 572.8 615 53.5
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 5.2e-161 572.0 566 53.5
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 5.2e-161 572.0 560 54.8
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 6.7e-161 571.6 566 53.7
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 9.7e-160 567.8 553 55.7
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 9.7e-160 567.8 572 53.3
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 1.7e-159 567.0 560 54.8
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 2.2e-159 566.6 564 54.4
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 8.2e-159 564.7 569 54.1
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 1.1e-158 564.3 542 56.3
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.4e-158 563.9 474 61.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.8e-158 563.5 547 56.7
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 2.4e-158 563.1 564 54.3
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 7.0e-158 561.6 558 52.0
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 8.5e-156 554.7 567 54.1
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 4.2e-155 552.4 539 56.2
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 4.2e-155 552.4 589 51.8
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 7.2e-155 551.6 552 55.8
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 9.4e-155 551.2 573 54.8
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 9.4e-155 551.2 538 53.9
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 9.4e-155 551.2 554 56.0
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.2e-154 550.8 555 53.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 1.6e-154 550.4 574 54.5
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 4.0e-153 545.8 546 56.2
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 4.0e-153 545.8 570 53.9
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 3.3e-152 542.7 542 55.4
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 3.3e-152 542.7 546 55.3
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.4e-152 542.3 546 55.3
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 9.7e-152 541.2 552 54.0
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.1e-150 536.2 604 51.3
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.0e-149 533.5 534 54.9
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 3.8e-148 529.3 558 54.3
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.1e-147 527.7 544 53.7
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 1.2e-146 524.2 564 52.3
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 6.1e-146 521.9 543 51.2
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 6.8e-145 518.5 524 53.8
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 2.5e-139 500.0 435 58.9
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 7.2e-139 498.4 566 49.5
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.0e-137 493.0 550 53.3
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 2.8e-135 486.5 598 46.5
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 6.3e-135 485.3 472 55.3
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.4e-134 484.2 555 50.8
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 4.1e-134 482.6 502 53.8
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 5.4e-134 482.3 569 44.6
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 2.7e-133 479.9 568 47.2
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 1.0e-132 478.0 537 48.4
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 3.2e-126 456.4 567 46.2
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.9e-124 449.5 565 45.8
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 9.5e-123 444.9 554 47.3
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 1.6e-122 444.1 279 76.0
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 2.6e-120 436.8 466 51.3
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 1.2e-109 401.4 542 43.5
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-105 387.9 378 56.3
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-97 360.5 401 51.6
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 9.9e-96 355.1 543 40.3
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 3.5e-93 346.7 415 49.6
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 4.0e-89 333.2 557 37.5
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 6.9e-89 332.4 567 36.0
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 1.3e-87 328.2 244 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 4.2e-86 323.2 541 37.3
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 2.1e-77 294.3 543 34.4
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 9.6e-75 285.4 243 58.8
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.8e-74 283.9 362 46.4
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 8.5e-55 219.2 354 34.5
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 5.7e-51 206.5 213 52.6
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.8e-47 193.7 163 58.3
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 2.0e-43 181.4 116 76.7
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 3.7e-34 150.6 147 49.7
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 5.9e-24 116.7 295 30.5
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 4.4e-19 100.5 169 37.9
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-18 99.0 249 32.1
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.6e-16 92.0 224 35.7
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 4.7e-13 80.5 365 23.8
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 4.7e-13 80.5 104 48.1
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 1.7e-10 72.0 49 63.3
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 4.9e-10 70.5 269 27.5


User provided reference genes

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