Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6433 Trifolium pratense HOM05D000251 ORTHO05D031681 1.9e-33 145.2 71 100.0
Psat6g048920 Pisum sativum HOM05D000251 ORTHO05D005532 7.1e-12 73.6 33 100.0
Cfa004459 Carpinus fangiana HOM05D000251 ORTHO05D005532 2.7e-11 71.6 33 97.0
CiPaw.03G180300 Carya illinoinensis HOM05D000251 ORTHO05D005532 2.7e-11 71.6 33 97.0
Glyma.12G205800 Glycine max HOM05D000251 ORTHO05D005532 2.7e-11 71.6 33 93.9
Glyma.13G295100 Glycine max HOM05D000251 ORTHO05D005532 2.7e-11 71.6 33 93.9
Phvul.005G101400 Phaseolus vulgaris HOM05D000251 ORTHO05D005532 2.7e-11 71.6 33 93.9
Medtr2g090610 Medicago truncatula HOM05D000251 ORTHO05D005532 1.0e-10 69.7 33 90.9
CiPaw.04G127700 Carya illinoinensis HOM05D000251 ORTHO05D005532 1.7e-10 68.9 33 90.9
arahy.Tifrunner.gnm1.ann1.28NLID Arachis hypogaea HOM05D000251 ORTHO05D005532 2.3e-10 68.6 33 87.9
Lalb_Chr14g0367081 Lupinus albus HOM05D000251 ORTHO05D005532 2.3e-10 68.6 33 90.9
Prupe.3G133300 Prunus persica HOM05D000251 ORTHO05D005532 2.3e-10 68.6 33 90.9
Haze_13212 Corylus avellana HOM05D000251 ORTHO05D005532 3.0e-10 68.2 33 93.9
Lalb_Chr24g0399971 Lupinus albus HOM05D000251 ORTHO05D005532 3.9e-10 67.8 33 90.9
AUR62032108 Chenopodium quinoa HOM05D000251 ORTHO05D005532 5.1e-10 67.4 33 87.9
Gohir.A12G139000 Gossypium hirsutum HOM05D000251 ORTHO05D005532 6.6e-10 67.0 33 87.9
Gorai.008G154700 Gossypium raimondii HOM05D000251 ORTHO05D005532 6.6e-10 67.0 33 87.9
Atru.chr6.2885 Acer truncatum HOM05D000251 ORTHO05D005532 8.6e-10 66.6 33 87.9
CSS0015858 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.1e-09 66.2 33 90.9
CSS0049313 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D031681 1.1e-09 66.2 33 90.9
DCAR_000770 Daucus carota HOM05D000251 ORTHO05D005532 1.1e-09 66.2 33 84.8
HanXRQChr03g0078711 Helianthus annuus HOM05D000251 ORTHO05D005532 1.1e-09 66.2 33 81.8
QL08p039811 Quercus lobata HOM05D000251 ORTHO05D005532 1.1e-09 66.2 33 87.9
Sed0009923 Sechium edule HOM05D000251 ORTHO05D005532 1.1e-09 66.2 33 87.9
Ah.16g106630 Amaranthus hybridus HOM05D000251 ORTHO05D005532 2.5e-09 65.1 33 84.8
MELO3C018710.2 Cucumis melo HOM05D000251 ORTHO05D005532 2.5e-09 65.1 33 87.9
CsaV3_7G005820 Cucumis sativus L. HOM05D000251 ORTHO05D005532 2.5e-09 65.1 33 87.9
Potri.017G013500 Populus trichocarpa HOM05D000251 ORTHO05D005532 2.5e-09 65.1 35 88.6
Sed0000387 Sechium edule HOM05D000251 ORTHO05D005532 2.5e-09 65.1 33 87.9
MD17G1235400 Malus domestica HOM05D000251 ORTHO05D005532 3.3e-09 64.7 33 87.9
Sc12g0003170 Simmondsia chinensis HOM05D000251 ORTHO05D005532 3.3e-09 64.7 33 84.8
GSVIVG01020583001 Vitis vinifera HOM05D000251 ORTHO05D005532 3.3e-09 64.7 33 87.9
Rhsim04G0070600 Rhododendron simsii HOM05D000251 ORTHO05D005532 5.6e-09 63.9 33 87.9
Actinidia11011 Actinidia chinensis HOM05D000251 ORTHO05D005532 7.3e-09 63.5 33 87.9
PGR142G3105 Punica granatum HOM05D000251 ORTHO05D005532 7.3e-09 63.5 33 87.9
ClCG07G002540 Citrullus lanatus HOM05D000251 ORTHO05D005532 9.5e-09 63.2 33 87.9
vmacro09254 Vaccinium macrocarpon HOM05D000251 ORTHO05D005532 9.5e-09 63.2 33 84.8
CANSAT64G2637 Cannabis sativa HOM05D000251 ORTHO05D005532 1.2e-08 62.8 33 84.8
MD09G1243400 Malus domestica HOM05D000251 ORTHO05D005532 1.2e-08 62.8 33 84.8
Ciclev10014095m.g Citrus clementina HOM05D000251 ORTHO05D005532 1.6e-08 62.4 33 78.8
Lsat_1_v5_gn_5_44941 Lactuca sativa HOM05D000251 ORTHO05D005532 1.6e-08 62.4 33 78.8
Lj8C560G4 Lonicera japonica HOM05D000251 ORTHO05D005532 1.6e-08 62.4 33 81.8
Actinidia30460 Actinidia chinensis HOM05D000251 ORTHO05D005532 2.1e-08 62.0 33 78.8
Thecc.02G183800 Theobroma cacao HOM05D000251 ORTHO05D005532 2.1e-08 62.0 33 81.8
THA.LOC104826038 Tarenaya hassleriana HOM05D000251 ORTHO05D005532 2.8e-08 61.6 33 81.8
RcHm_v2.0_Chr7g0223111 Rosa chinensis HOM05D000251 ORTHO05D005532 3.6e-08 61.2 33 78.8
Dinv02916 Davidia involucrata HOM05D000251 ORTHO05D005532 4.7e-08 60.8 33 84.8
Nitab4.5_0000159g0190 Nicotiana tabacum HOM05D000251 ORTHO05D005532 4.7e-08 60.8 33 78.8
Nitab4.5_0006666g0010 Nicotiana tabacum HOM05D000251 ORTHO05D005532 4.7e-08 60.8 33 78.8
Sabra17G0011000 Salix brachista HOM05D000251 ORTHO05D005532 4.7e-08 60.8 35 82.9
MSTRG.25929 Avicennia marina HOM05D000251 ORTHO05D005532 8.1e-08 60.1 33 78.8
Migut.A00166 Erythranthe guttata HOM05D000251 ORTHO05D005532 8.1e-08 60.1 33 78.8
SalBow7G3451 Salvia bowleyana HOM05D000251 ORTHO05D005532 8.1e-08 60.1 33 78.8
Aqoxy4G02325 Aquilegia oxysepala HOM05D000251 ORTHO05D005532 1.1e-07 59.7 32 81.2
CAN.G61.26 Capsicum annuum HOM05D000251 ORTHO05D005532 1.1e-07 59.7 33 75.8
DCAR_004456 Daucus carota HOM05D000251 ORTHO05D005532 1.1e-07 59.7 34 85.3
PSO541G3054 Papaver somniferum HOM05D000251 ORTHO05D005532 1.1e-07 59.7 33 75.8
PSO675G3162 Papaver somniferum HOM05D000251 ORTHO05D005532 1.1e-07 59.7 33 75.8
Solyc11g017170.1 Solanum lycopersicum HOM05D000251 ORTHO05D005532 1.1e-07 59.7 33 75.8
Eucgr.K01048 Eucalyptus grandis HOM05D000251 ORTHO05D005532 1.4e-07 59.3 33 78.8
Lj3g0007891 Lotus japonicus HOM05D000251 ORTHO05D005532 1.4e-07 59.3 31 80.6
Thhalv10003135m.g Eutrema salsugineum HOM05D000251 ORTHO05D005532 1.8e-07 58.9 33 78.8
FvH4_5g29681 Fragaria vesca HOM05D000251 ORTHO05D005532 2.4e-07 58.5 33 72.7
FAN04G0170 Fragaria x ananassa HOM05D000251 ORTHO05D005532 2.4e-07 58.5 33 72.7
FAN08G1506 Fragaria x ananassa HOM05D000251 ORTHO05D005532 2.4e-07 58.5 33 72.7
Nn7g36698 Nelumbo nucifera HOM05D000251 ORTHO05D005532 2.4e-07 58.5 33 78.8
AL8G15780 Arabidopsis lyrata HOM05D000251 ORTHO05D005532 3.1e-07 58.2 33 78.8
AT5G44240 Arabidopsis thaliana HOM05D000251 ORTHO05D005532 3.1e-07 58.2 33 78.8
Carub.0008s0428 Capsella rubella HOM05D000251 ORTHO05D005532 3.1e-07 58.2 33 78.8
Manes.13G143600 Manihot esculenta HOM05D000251 ORTHO05D005532 3.1e-07 58.2 34 79.4
Aa31LG5G3020 Aethionema arabicum HOM05D000251 ORTHO05D005532 4.0e-07 57.8 33 75.8
Peaxi162Scf00495g00121 Petunia axillaris HOM05D000251 ORTHO05D005532 4.0e-07 57.8 33 81.8
Sp2g09050 Schrenkiella parvula HOM05D000251 ORTHO05D005532 4.0e-07 57.8 33 75.8
BcaB07g30538 Brassica carinata HOM05D000251 ORTHO05D005532 1.5e-06 55.8 33 75.8
CDE11G0168 Ceratophyllum demersum HOM05D000251 ORTHO05D005532 2.0e-06 55.5 33 72.7
EL10Ac4g09119 Beta vulgaris HOM05D000251 ORTHO05D031681 2.6e-06 55.1 33 75.8
BolC2t10522H Brassica oleracea HOM05D000251 ORTHO05D005532 3.4e-06 54.7 33 72.7
BcaC06g34580 Brassica carinata HOM05D000251 ORTHO05D005532 4.4e-06 54.3 32 75.0
A06p47370 Brassica napus HOM05D000251 ORTHO05D005532 4.4e-06 54.3 32 75.0
MBI15_g37780_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D005532 7.6e-06 53.5 33 75.8
C07p26900 Brassica napus HOM05D000251 ORTHO05D005532 9.9e-06 53.1 32 71.9


User provided reference genes

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