Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6428 Trifolium pratense HOM05D009824 ORTHO05D012089 1.2e-49 199.5 103 100.0
TPR.G6486 Trifolium pratense HOM05D009824 ORTHO05D012089 2.9e-30 135.2 100 71.0
Medtr2g090725 Medicago truncatula HOM05D009824 ORTHO05D012089 4.9e-14 81.3 75 56.0
Medtr2g090625 Medicago truncatula HOM05D009824 ORTHO05D012089 2.1e-12 75.9 77 57.1
Glyma.20G066000 Glycine max HOM05D009824 ORTHO05D012089 1.0e-11 73.6 70 55.7
Lalb_Chr22g0356681 Lupinus albus HOM05D009824 ORTHO05D012089 3.0e-11 72.0 71 53.5
Sabra13G0115000 Salix brachista HOM05D009824 ORTHO05D012089 2.5e-10 68.9 73 45.2
CsaV3_3G023270 Cucumis sativus L. HOM05D009824 ORTHO05D012089 3.3e-10 68.6 72 48.6
Ciclev10018043m.g Citrus clementina HOM05D009824 ORTHO05D012089 4.3e-10 68.2 72 48.6
Lalb_Chr04g0260751 Lupinus albus HOM05D009824 ORTHO05D012089 5.6e-10 67.8 57 57.9
Lj3g0019093 Lotus japonicus HOM05D009824 ORTHO05D012089 7.3e-10 67.4 77 49.4
Lalb_Chr22g0356671 Lupinus albus HOM05D009824 ORTHO05D012089 9.6e-10 67.0 71 47.9
Lalb_Chr22g0356691 Lupinus albus HOM05D009824 ORTHO05D012089 9.6e-10 67.0 71 47.9
Prupe.3G207900 Prunus persica HOM05D009824 ORTHO05D012089 2.8e-09 65.5 77 48.1
ClCG03G017300 Citrullus lanatus HOM05D009824 ORTHO05D010344 3.6e-09 65.1 71 42.3
AL4G30810 Arabidopsis lyrata HOM05D010425 ORTHO05D014400 4.8e-09 64.7 69 46.4
Lj3g0010521 Lotus japonicus HOM05D009824 ORTHO05D012089 8.1e-09 63.9 75 49.3
AT2G34825 Arabidopsis thaliana HOM05D010425 ORTHO05D014400 3.1e-08 62.0 68 45.6
Carub.0004s1429 Capsella rubella HOM05D010425 ORTHO05D014400 3.1e-08 62.0 69 44.9
AL4G28390 Arabidopsis lyrata HOM05D010425 ORTHO05D014400 4.0e-08 61.6 71 43.7
Atru.chr10.1415 Acer truncatum HOM05D009824 ORTHO05D012913 5.3e-08 61.2 72 47.2
arahy.Tifrunner.gnm1.ann1.D6BKB3 Arachis hypogaea HOM05D039930 ORTHO05D031512 6.9e-08 60.8 57 49.1
Potri.019G102400 Populus trichocarpa HOM05D000973 ORTHO05D012089 1.2e-07 60.1 80 38.8
CARHR126820 Cardamine hirsuta HOM05D010425 ORTHO05D014400 1.5e-07 59.7 71 42.3
Thhalv10012132m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 2.0e-07 59.3 48 54.2
Thhalv10012318m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 2.0e-07 59.3 48 54.2
AT1G23145 Arabidopsis thaliana HOM05D008965 ORTHO05D031329 2.6e-07 58.9 67 47.8
Thhalv10011947m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 2.6e-07 58.9 75 40.0
Carub.0002s0682 Capsella rubella HOM05D010069 ORTHO05D011961 3.4e-07 58.5 62 40.3
Thhalv10012049m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 3.4e-07 58.5 75 40.0
AL1G36810 Arabidopsis lyrata HOM05D008965 ORTHO05D031329 4.5e-07 58.2 78 44.9
AT2G32885 Arabidopsis thaliana HOM05D010425 ORTHO05D014400 4.5e-07 58.2 65 44.6
Carub.0002s0363 Capsella rubella HOM05D008190 ORTHO05D010344 4.5e-07 58.2 73 41.1
ClCG03G012270 Citrullus lanatus HOM05D009824 ORTHO05D012089 4.5e-07 58.2 70 37.1
Thhalv10012096m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 7.6e-07 57.4 70 38.6
AT1G61566 Arabidopsis thaliana HOM05D008190 ORTHO05D010344 9.9e-07 57.0 73 43.8
Cpa.g.sc183.18 Carica papaya HOM05D009824 ORTHO05D012089 1.3e-06 56.6 66 47.0
Thhalv10023965m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 1.3e-06 56.6 70 38.6
TPR.G231 Trifolium pratense HOM05D017706 ORTHO05D020286 1.3e-06 56.6 77 45.5
arahy.Tifrunner.gnm1.ann1.RPP3JL Arachis hypogaea HOM05D039930 ORTHO05D031512 1.7e-06 56.2 57 43.9
Thhalv10024045m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 1.7e-06 56.2 67 38.8
AT4G11653 Arabidopsis thaliana HOM05D019867 ORTHO05D016570 2.2e-06 55.8 78 41.0
Thhalv10002825m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 2.9e-06 55.5 52 48.1
Sabra18G0014900 Salix brachista HOM05D002483 ORTHO05D003728 3.8e-06 55.1 52 51.9
CARHR050840 Cardamine hirsuta HOM05D008190 ORTHO05D010344 4.9e-06 54.7 72 40.3
Carub.0002s0714 Capsella rubella HOM05D010069 ORTHO05D011961 6.4e-06 54.3 60 38.3
Carub.0002s0715 Capsella rubella HOM05D010069 ORTHO05D011961 6.4e-06 54.3 60 38.3
Carub.0002s0717 Capsella rubella HOM05D010069 ORTHO05D011961 6.4e-06 54.3 60 38.3
Glyma.13G294734 Glycine max HOM05D009824 ORTHO05D012089 6.4e-06 54.3 71 43.7
TPR.G29488 Trifolium pratense HOM05D017706 ORTHO05D020286 6.4e-06 54.3 77 45.5
Thhalv10023902m.g Eutrema salsugineum HOM05D010069 ORTHO05D011961 8.4e-06 53.9 74 40.5
TPR.G571 Trifolium pratense HOM05D017706 ORTHO05D020286 8.4e-06 53.9 79 44.3


User provided reference genes

Program Settings