Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.1e-297 1024.6 626 100.0
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.2e-269 932.9 648 84.6
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.8e-268 929.1 643 85.4
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 4.4e-267 924.5 644 84.9
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.6e-240 836.3 644 71.4
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.3e-239 833.2 643 71.2
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.3e-239 833.2 643 70.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 9.6e-238 827.0 636 71.4
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.1e-236 823.5 643 69.7
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.4e-236 823.2 645 69.3
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.8e-236 822.8 645 70.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.3e-236 821.2 645 69.5
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 5.3e-236 821.2 645 69.9
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.2e-235 820.1 644 71.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.0e-235 819.3 645 70.4
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 3.4e-235 818.5 645 71.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 5.8e-235 817.8 645 70.1
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 7.6e-235 817.4 647 69.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.7e-234 816.2 645 69.0
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.2e-234 815.8 645 71.9
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.9e-234 814.7 645 67.4
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 7.1e-233 810.8 645 68.2
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 7.9e-232 807.4 642 70.9
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.5e-230 803.1 644 69.6
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 5.7e-230 801.2 643 67.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 1.6e-229 799.7 644 70.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 1.6e-229 799.7 643 68.7
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 3.7e-229 798.5 644 65.5
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.3e-229 797.7 644 67.4
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 9.0e-228 793.9 642 68.1
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.5e-227 793.1 642 70.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 2.6e-227 792.3 645 68.1
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.6e-227 790.8 644 66.3
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 1.0e-226 790.4 644 66.9
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.0e-226 790.4 642 67.8
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.5e-226 787.7 644 67.5
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.5e-226 787.7 644 67.5
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.5e-225 785.8 656 62.8
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.2e-225 785.4 656 65.4
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 3.2e-225 785.4 642 70.4
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 7.2e-225 784.3 644 67.7
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 7.2e-225 784.3 642 69.0
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-224 783.5 656 62.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.2e-224 783.5 644 64.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.2e-224 783.5 645 65.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.6e-224 781.6 642 65.6
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.7e-223 777.3 641 65.1
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 1.9e-222 776.2 644 65.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.9e-222 776.2 645 65.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.5e-222 775.8 645 65.7
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 3.3e-222 775.4 650 65.5
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 9.7e-222 773.9 638 64.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.2e-221 772.7 645 65.7
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.7e-221 771.9 644 65.7
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.7e-221 771.9 645 65.4
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 6.3e-221 771.2 644 65.2
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.2e-221 770.8 645 65.3
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 8.2e-221 770.8 645 65.0
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 8.2e-221 770.8 646 64.9
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-220 770.4 645 65.6
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.1e-220 770.4 646 66.1
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.4e-220 770.0 648 64.4
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.4e-220 770.0 645 64.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-220 769.2 645 65.4
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 6.9e-220 767.7 645 63.4
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 6.9e-220 767.7 645 63.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 9.0e-220 767.3 645 69.0
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-219 766.9 645 65.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 1.2e-219 766.9 646 67.0
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 2.0e-219 766.1 645 66.0
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.6e-219 765.8 645 65.9
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.4e-219 765.4 644 64.8
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 4.5e-219 765.0 645 64.2
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 4.5e-219 765.0 644 64.8
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 5.9e-219 764.6 648 64.8
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 5.9e-219 764.6 643 63.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.3e-218 763.5 645 64.5
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-218 762.7 643 62.8
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.9e-218 762.3 644 64.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 5.0e-218 761.5 644 64.1
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 5.0e-218 761.5 644 64.6
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.4e-217 760.0 644 64.9
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.9e-217 759.6 645 64.3
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.9e-217 759.6 645 64.3
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.9e-217 759.6 645 64.3
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 3.2e-217 758.8 644 63.2
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 5.5e-217 758.1 646 64.7
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.6e-216 756.5 648 63.7
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 2.1e-216 756.1 644 66.9
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.7e-216 755.7 644 65.4
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 6.7e-215 751.1 649 65.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 8.8e-215 750.7 644 66.3
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.1e-214 750.4 645 63.1
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.4e-214 747.7 644 65.1
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.7e-213 746.5 646 64.1
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.8e-213 745.7 653 66.2
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.4e-212 743.4 638 65.4
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 3.1e-212 742.3 643 62.1
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 9.1e-212 740.7 644 63.7
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.6e-211 739.2 656 62.7
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 1.4e-209 733.4 644 68.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.2e-209 731.1 642 65.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 3.0e-207 725.7 644 60.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 5.1e-207 724.9 646 61.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 5.1e-207 724.9 646 61.0
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 6.5e-202 708.0 644 60.6
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 3.6e-200 702.2 595 64.2
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.3e-198 695.7 595 60.8
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.7e-197 692.2 651 60.7
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 3.1e-196 689.1 651 60.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-191 673.7 643 59.6
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.0e-191 672.5 654 58.6
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-189 667.2 885 46.7
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.8e-188 663.3 625 61.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.9e-186 656.0 645 58.1
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.0e-184 647.9 643 59.3
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 8.8e-183 644.4 644 59.9
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.8e-180 636.7 644 58.1
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.8e-175 620.2 426 71.8
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-169 600.9 611 55.0
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.7e-157 560.5 525 61.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.8e-151 538.5 626 51.9
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 1.7e-138 497.3 642 46.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.6e-138 495.4 564 54.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 4.0e-135 486.1 644 46.3
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.8e-127 460.7 648 46.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 9.0e-119 431.8 642 46.6
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 8.2e-112 408.7 650 39.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.5e-105 387.1 622 40.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.8e-90 337.8 209 77.5
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.5e-81 305.8 277 57.4
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 4.0e-74 283.5 337 49.3
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 3.0e-66 257.3 649 35.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-53 215.7 128 80.5
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 7.5e-49 199.5 148 68.2
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 9.8e-49 199.1 152 68.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 3.5e-46 190.7 628 27.2
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 5.0e-45 186.8 250 53.6
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.1e-31 139.8 201 42.8
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.0e-29 136.0 98 67.3
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 4.6e-22 110.5 79 63.3
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 3.9e-21 107.5 79 62.0
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.1e-20 105.9 107 55.1
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 2.8e-19 101.3 473 28.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.0e-17 95.1 112 44.6
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-10 72.8 59 59.3
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 3.1e-10 71.2 129 37.2


User provided reference genes

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