Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G641 Trifolium pratense HOM05D005342 ORTHO05D006925 4.0e-41 171.4 113 100.0
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 2.0e-24 115.9 114 72.8
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 2.0e-24 115.9 114 72.8
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 3.7e-23 111.7 81 100.0
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 2.0e-21 105.9 103 68.9
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 1.7e-20 102.8 109 62.4
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 1.7e-20 102.8 110 60.0
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 3.0e-20 102.1 116 55.2
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 3.0e-20 102.1 98 68.4
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 1.1e-19 100.1 104 66.3
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 1.5e-19 99.8 103 58.3
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 1.9e-19 99.4 104 66.3
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 1.9e-19 99.4 114 54.4
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 3.3e-19 98.6 113 61.9
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 9.5e-19 97.1 103 58.3
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 1.6e-18 96.3 109 56.0
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 2.1e-18 95.9 109 53.2
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 2.1e-18 95.9 113 53.1
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 2.8e-18 95.5 109 57.8
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 2.8e-18 95.5 115 56.5
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 3.6e-18 95.1 111 57.7
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 3.6e-18 95.1 103 57.3
Cpa.g.sc30.113 Carica papaya HOM05D005342 ORTHO05D006925 1.1e-17 93.6 113 52.2
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 1.1e-17 93.6 109 68.8
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 1.4e-17 93.2 113 54.9
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 1.8e-17 92.8 117 61.5
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 1.8e-17 92.8 114 53.5
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 2.3e-17 92.4 121 50.4
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 2.3e-17 92.4 114 54.4
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 3.1e-17 92.0 120 50.8
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 3.1e-17 92.0 113 54.0
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 3.1e-17 92.0 113 54.0
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 3.1e-17 92.0 113 54.0
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 3.1e-17 92.0 104 62.5
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 4.0e-17 91.7 48 100.0
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 4.0e-17 91.7 48 100.0
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 4.0e-17 91.7 100 54.0
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 5.2e-17 91.3 121 51.2
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 5.2e-17 91.3 117 50.4
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 6.8e-17 90.9 117 54.7
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 6.8e-17 90.9 121 50.4
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 6.8e-17 90.9 103 57.3
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 8.9e-17 90.5 93 71.0
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 1.2e-16 90.1 117 52.1
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 1.2e-16 90.1 113 56.6
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 1.5e-16 89.7 114 53.5
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 1.5e-16 89.7 123 51.2
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 2.0e-16 89.4 48 95.8
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 3.4e-16 88.6 117 51.3
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 3.4e-16 88.6 48 95.8
HPP92_001866 Vanilla planifolia HOM05D005342 ORTHO05D006925 3.4e-16 88.6 90 71.1
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 4.4e-16 88.2 48 93.8
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 4.4e-16 88.2 48 91.7
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 5.8e-16 87.8 47 95.7
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 5.8e-16 87.8 47 95.7
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 5.8e-16 87.8 48 93.8
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 5.8e-16 87.8 47 95.7
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 5.8e-16 87.8 83 60.2
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 7.5e-16 87.4 76 67.1
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 7.5e-16 87.4 78 66.7
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 7.5e-16 87.4 48 91.7
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 7.5e-16 87.4 48 91.7
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 7.5e-16 87.4 114 54.4
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 7.5e-16 87.4 105 54.3
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 9.8e-16 87.0 48 91.7
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 9.8e-16 87.0 48 91.7
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 9.8e-16 87.0 116 50.9
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 9.8e-16 87.0 116 50.9
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 1.3e-15 86.7 109 50.5
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 1.3e-15 86.7 113 55.8
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 1.3e-15 86.7 114 51.8
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 1.3e-15 86.7 48 91.7
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 1.3e-15 86.7 114 61.4
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 1.3e-15 86.7 47 93.6
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 1.3e-15 86.7 103 54.4
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 1.3e-15 86.7 48 91.7
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 1.7e-15 86.3 47 91.5
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 1.7e-15 86.3 48 91.7
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 1.7e-15 86.3 116 50.0
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 2.2e-15 85.9 82 61.0
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 2.2e-15 85.9 122 50.8
Zm00001eb413810 Zea mays HOM05D005342 ORTHO05D006925 2.2e-15 85.9 105 54.3
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 2.9e-15 85.5 48 89.6
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 2.9e-15 85.5 48 89.6
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 2.9e-15 85.5 48 89.6
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 2.9e-15 85.5 103 54.4
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 2.9e-15 85.5 48 91.7
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 2.9e-15 85.5 47 91.5
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 2.9e-15 85.5 80 62.5
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 3.7e-15 85.1 103 59.2
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 3.7e-15 85.1 48 89.6
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 4.9e-15 84.7 47 89.4
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 8.3e-15 84.0 105 53.3
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 1.4e-14 83.2 48 87.5
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 1.4e-14 83.2 48 85.4
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 1.4e-14 83.2 47 87.2
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 1.4e-14 83.2 47 87.2
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 1.4e-14 83.2 47 87.2
Oeu016702.1 Olea europaea HOM05D005342 ORTHO05D006925 1.4e-14 83.2 48 89.6
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 1.4e-14 83.2 143 51.0
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 1.9e-14 82.8 109 51.4
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 4.1e-14 81.6 47 89.4
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 5.4e-14 81.3 48 85.4
Atru.chr10.358 Acer truncatum HOM05D002757 ORTHO05D003252 7.0e-14 80.9 48 85.4
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 3.5e-13 78.6 145 51.0
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 1.1e-11 73.6 72 62.5
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 7.3e-11 70.9 48 72.9
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 2.1e-10 69.3 87 51.7
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 3.6e-10 68.6 87 48.3
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 2.3e-09 65.9 46 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 4.0e-09 65.1 46 71.7


User provided reference genes

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