Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.8e-162 575.5 348 100.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.2e-127 459.5 347 83.6
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.6e-107 392.9 362 64.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 4.9e-106 388.7 349 72.5
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.9e-87 325.9 362 55.2
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 6.2e-85 318.5 360 53.9
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 8.9e-84 314.7 360 53.1
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.4e-81 306.6 322 55.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 2.1e-80 303.5 331 55.3
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.6e-75 286.6 330 53.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 2.6e-75 286.6 321 53.3
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 3.8e-74 282.7 337 52.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.6e-72 277.3 332 52.1
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.7e-72 276.6 300 56.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 7.3e-70 268.5 270 59.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.3e-69 267.7 329 51.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 8.1e-69 265.0 324 52.5
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 5.3e-68 262.3 337 50.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.4e-67 259.2 327 49.2
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.9e-67 258.1 329 50.5
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.3e-66 257.7 336 49.4
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.7e-66 257.3 329 50.2
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-66 256.9 329 50.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.9e-66 256.5 334 49.4
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 2.9e-66 256.5 328 50.6
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.8e-66 256.1 334 48.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.2e-65 252.7 337 47.8
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.6e-64 250.8 336 46.7
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.1e-64 250.4 337 47.5
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.1e-64 250.4 359 44.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 4.6e-64 249.2 334 48.2
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.1e-62 244.6 334 47.0
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.3e-62 243.0 373 45.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.3e-62 243.0 335 46.0
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 4.3e-62 242.7 363 45.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.4e-62 241.9 322 47.2
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.3e-61 241.1 329 48.9
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.6e-61 240.7 334 48.2
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.8e-61 240.0 337 46.6
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.8e-60 237.3 363 43.0
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-60 237.3 337 46.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.4e-60 236.9 335 46.6
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 9.0e-60 235.0 334 46.7
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.2e-59 234.6 337 46.9
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.6e-59 233.4 333 44.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 7.6e-59 231.9 334 45.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.3e-58 231.1 337 46.9
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.2e-58 230.3 339 45.7
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-58 229.9 342 46.8
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.8e-58 229.6 330 45.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.9e-58 229.2 333 45.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.9e-58 229.2 337 45.1
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.4e-57 227.6 332 47.6
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.4e-57 226.9 337 45.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.1e-57 225.3 358 41.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 9.3e-57 224.9 331 45.6
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 6.0e-56 222.2 358 43.0
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 7.9e-56 221.9 341 44.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 7.9e-56 221.9 336 46.1
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.3e-55 220.3 337 45.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 3.0e-55 219.9 335 42.7
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.0e-55 219.9 388 39.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 5.1e-55 219.2 335 43.9
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 5.6e-54 215.7 343 44.9
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.7e-53 213.0 359 43.7
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 6.2e-53 212.2 363 41.6
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-52 211.1 333 41.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.4e-52 210.3 337 45.1
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.3e-52 209.1 358 41.6
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.9e-52 208.8 254 50.8
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.2e-51 208.0 343 44.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-51 208.0 273 49.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.5e-51 207.6 258 50.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 5.8e-51 205.7 332 42.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 7.6e-51 205.3 335 42.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.2e-50 203.8 417 36.7
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.9e-50 203.4 327 42.8
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 6.5e-50 202.2 334 41.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.4e-49 201.1 422 37.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.9e-49 200.7 336 42.0
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.9e-49 200.7 410 39.3
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.6e-48 197.6 365 38.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.1e-48 197.2 334 39.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.9e-47 193.0 337 41.2
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 8.7e-47 191.8 301 42.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.5e-46 190.3 334 39.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.5e-46 190.3 334 39.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 6.3e-45 185.7 336 38.4
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.4e-44 183.7 336 38.1
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.4e-44 183.7 334 38.6
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 9.0e-44 181.8 342 39.8
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.2e-43 181.4 336 40.8
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.5e-43 181.0 272 46.0
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.4e-43 179.9 272 45.2
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 7.6e-43 178.7 261 46.0
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.3e-42 177.9 298 42.3
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.2e-42 177.2 335 39.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.9e-42 176.8 192 53.1
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.8e-42 176.4 363 37.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 8.5e-42 175.3 335 39.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 3.2e-41 173.3 289 42.6
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 9.3e-41 171.8 297 41.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 1.6e-40 171.0 273 45.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.3e-39 167.9 273 44.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.9e-39 166.4 298 41.6
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 8.7e-39 165.2 392 36.2
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.5e-38 164.5 273 41.0
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.5e-38 163.7 303 39.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 9.7e-38 161.8 333 38.7
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.3e-37 161.4 279 41.9
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.7e-37 159.8 345 37.7
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 4.8e-37 159.5 247 42.1
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 8.2e-37 158.7 240 47.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.1e-36 158.3 273 42.9
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.0e-35 154.1 334 36.5
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.7e-35 152.1 274 41.2
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-34 150.2 271 41.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.8e-34 149.8 275 40.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-34 149.8 272 40.8
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-34 149.8 271 41.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-34 149.4 296 37.8
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.0e-34 149.4 299 38.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.5e-33 146.0 299 38.1
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 5.5e-33 146.0 302 39.1
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.4e-33 145.2 272 39.3
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.1e-32 142.5 302 38.7
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 5.1e-31 139.4 294 39.1
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 8.8e-31 138.7 274 40.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 8.8e-31 138.7 274 40.1
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 9.7e-30 135.2 278 38.8
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-29 134.8 312 34.6
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.7e-29 133.3 210 41.0
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 6.9e-28 129.0 274 35.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.7e-27 125.6 211 41.7
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 3.8e-26 123.2 250 37.6
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.5e-25 120.6 243 35.4
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.1e-24 115.9 413 29.1
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 8.8e-23 112.1 325 33.8
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.1e-22 111.7 222 37.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 5.7e-22 109.4 236 37.7
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-21 107.5 169 46.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 8.2e-21 105.5 178 37.6
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-20 105.1 170 47.1
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.3e-20 102.8 231 35.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 4.5e-19 99.8 124 50.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.0e-18 98.6 94 60.6
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-18 98.6 118 50.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.5e-17 92.8 122 43.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.2e-16 91.7 120 46.7
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.0e-15 88.6 261 31.4
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.3e-15 87.4 210 33.3
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-15 86.7 331 27.5
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-15 86.7 120 41.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-15 86.3 120 41.7
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-14 84.7 106 48.1
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 5.7e-14 82.8 101 45.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.7e-13 81.3 259 34.0
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.7e-13 80.1 278 29.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 4.8e-13 79.7 159 40.3
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 7.0e-12 75.9 95 54.7
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-11 74.3 216 32.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.0e-11 74.3 216 32.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.9e-11 72.8 337 24.3
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 7.7e-11 72.4 126 35.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.7e-10 71.2 221 32.6
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 5.0e-10 69.7 157 34.4
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 5.0e-10 69.7 157 34.4
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.9e-09 67.8 83 53.0
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 2.7e-08 63.9 312 26.9
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-07 61.2 205 30.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-07 61.2 100 43.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.4e-06 57.0 48 60.4
Medtr5g064760 Medicago truncatula HOM05D003516 ORTHO05D004068 3.4e-06 57.0 125 40.0
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.8e-06 55.5 85 41.2


User provided reference genes

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