Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 2.6e-142 508.8 283 100.0
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 2.4e-87 326.2 286 74.8
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 5.4e-71 271.9 207 76.8
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 2.3e-66 256.5 310 62.6
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 1.6e-43 180.6 341 50.1
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 4.5e-41 172.6 348 48.0
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 4.5e-41 172.6 334 50.0
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 2.7e-38 163.3 316 48.7
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 7.9e-38 161.8 319 47.3
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 5.1e-37 159.1 333 44.1
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 5.1e-37 159.1 333 44.1
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 6.7e-37 158.7 345 46.1
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 3.3e-36 156.4 322 46.3
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 1.8e-34 150.6 326 46.6
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 4.0e-34 149.4 327 42.5
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.2e-33 147.9 322 44.4
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.5e-33 147.5 331 43.2
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 5.8e-33 145.6 317 45.4
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 7.6e-33 145.2 320 42.5
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 9.9e-33 144.8 323 46.4
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 3.8e-32 142.9 323 45.8
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 4.9e-32 142.5 323 46.7
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 6.4e-32 142.1 321 48.3
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 8.4e-32 141.7 325 45.5
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 1.1e-31 141.4 315 38.7
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 1.6e-30 137.5 313 47.3
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 1.6e-30 137.5 314 46.5
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 2.7e-30 136.7 315 46.7
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 4.6e-30 136.0 319 46.4
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 1.0e-29 134.8 316 44.9
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 2.3e-29 133.7 323 37.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 3.9e-29 132.9 321 44.2
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 2.5e-28 130.2 324 40.7
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 4.3e-28 129.4 311 44.4
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.3e-27 127.9 311 43.7
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.1e-27 127.1 315 43.5
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 1.8e-26 124.0 317 42.3
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 2.4e-26 123.6 368 37.0
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 3.1e-26 123.2 315 41.0
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 3.1e-26 123.2 304 43.4
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 4.0e-26 122.9 315 41.0
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 5.8e-25 119.0 301 40.5
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 1.4e-23 114.4 342 40.4
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 3.2e-23 113.2 309 36.6
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 4.2e-23 112.8 324 37.3
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 5.5e-23 112.5 322 43.2
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 4.6e-22 109.4 339 38.3
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 6.0e-22 109.0 315 41.0
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 7.9e-22 108.6 210 41.9
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.0e-21 108.2 188 46.8
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 2.5e-20 103.6 327 38.8
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 2.5e-20 103.6 300 37.0
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 7.4e-20 102.1 340 39.4
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.3e-19 101.3 330 40.0
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 1.6e-19 100.9 337 31.5
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.2e-19 100.5 213 41.8
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 4.8e-19 99.4 344 38.4
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 2.4e-18 97.1 349 36.4
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 1.0e-16 91.7 294 38.1
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 1.3e-16 91.3 312 39.1
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.1e-15 88.2 169 45.6
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 2.1e-14 84.0 344 36.9
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 3.6e-14 83.2 359 32.3
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 1.0e-13 81.6 340 32.6
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 1.4e-13 81.3 337 34.1
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 1.4e-13 81.3 334 32.3
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 1.8e-13 80.9 309 41.1
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 6.7e-13 79.0 308 35.1
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 2.0e-12 77.4 285 37.2
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 3.3e-12 76.6 307 36.2
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 4.3e-12 76.3 175 42.3
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 5.7e-12 75.9 342 35.4
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 7.4e-12 75.5 329 34.0
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 9.7e-12 75.1 232 33.6
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 2.2e-11 73.9 174 44.8
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 4.8e-11 72.8 161 38.5
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 1.1e-10 71.6 198 38.9
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.8e-10 70.9 214 32.7
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 1.8e-10 70.9 279 40.9
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 4.1e-10 69.7 309 34.3
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.2e-09 68.2 346 33.8
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 2.6e-09 67.0 306 33.7
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 2.6e-09 67.0 306 33.7
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 4.5e-09 66.2 306 33.7
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 8.5e-08 62.0 201 34.3
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 4.2e-07 59.7 181 33.1
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 1.2e-06 58.2 263 36.9
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 1.2e-06 58.2 348 25.6


User provided reference genes

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