Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 1.1e-50 203.0 96 100.0
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 1.8e-48 195.7 93 96.8
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 5.0e-46 187.6 91 93.4
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 1.9e-45 185.7 94 91.5
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 5.5e-45 184.1 91 90.1
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 1.2e-44 183.0 91 91.2
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 1.1e-42 176.4 91 90.1
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 5.7e-42 174.1 90 87.8
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 5.7e-42 174.1 94 84.0
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.3e-41 172.9 90 87.8
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 2.2e-41 172.2 89 87.6
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 1.1e-40 169.9 91 84.6
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.1e-40 169.9 91 84.6
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.1e-40 169.9 91 84.6
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.1e-40 169.9 91 84.6
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 2.4e-40 168.7 90 83.3
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 3.1e-40 168.3 85 90.6
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 3.1e-40 168.3 85 90.6
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 4.1e-40 167.9 91 83.5
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 4.1e-40 167.9 90 84.4
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 5.3e-40 167.5 90 85.6
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 6.9e-40 167.2 90 84.4
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 6.9e-40 167.2 83 91.6
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 9.1e-40 166.8 90 84.4
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 1.2e-39 166.4 91 80.2
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 1.2e-39 166.4 90 84.4
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 2.6e-39 165.2 89 86.5
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 3.4e-39 164.9 91 83.5
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 5.9e-39 164.1 90 85.6
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 7.7e-39 163.7 90 82.2
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.0e-38 163.3 85 87.1
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 1.0e-38 163.3 90 83.3
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 1.0e-38 163.3 90 83.3
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.3e-38 162.9 91 84.6
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 1.3e-38 162.9 91 84.6
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 2.2e-38 162.2 87 85.1
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 2.2e-38 162.2 90 85.6
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 2.9e-38 161.8 84 86.9
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 2.9e-38 161.8 90 83.3
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.8e-38 161.4 90 83.3
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 8.5e-38 160.2 88 83.0
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 8.5e-38 160.2 84 85.7
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 1.1e-37 159.8 90 81.1
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 1.1e-37 159.8 83 88.0
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.4e-37 159.5 90 82.2
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 1.9e-37 159.1 92 79.3
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 1.9e-37 159.1 83 84.3
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 2.5e-37 158.7 90 81.1
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 4.2e-37 157.9 86 81.4
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 4.2e-37 157.9 86 81.4
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 4.2e-37 157.9 84 86.9
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 5.5e-37 157.5 91 83.5
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 9.4e-37 156.8 85 84.7
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 9.4e-37 156.8 90 83.3
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 2.1e-36 155.6 85 82.4
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 2.1e-36 155.6 95 75.8
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 2.7e-36 155.2 86 80.2
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 2.7e-36 155.2 85 83.5
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 3.6e-36 154.8 85 84.7
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 3.6e-36 154.8 82 86.6
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 3.6e-36 154.8 90 75.6
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 3.6e-36 154.8 90 75.6
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.1e-36 154.1 94 74.5
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 6.1e-36 154.1 91 81.3
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 7.9e-36 153.7 87 79.3
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 7.9e-36 153.7 87 79.3
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 7.9e-36 153.7 87 79.3
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 1.0e-35 153.3 87 79.3
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 1.0e-35 153.3 90 78.9
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.0e-35 153.3 90 78.9
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.0e-35 153.3 90 81.1
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 1.4e-35 152.9 87 78.2
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.8e-35 152.5 90 81.1
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 1.8e-35 152.5 90 81.1
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 2.3e-35 152.1 90 81.1
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 2.3e-35 152.1 90 81.1
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 3.0e-35 151.8 86 79.1
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 3.0e-35 151.8 98 73.5
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 3.9e-35 151.4 90 80.0
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 3.9e-35 151.4 85 82.4
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 8.8e-35 150.2 89 78.7
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 1.1e-34 149.8 92 73.9
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 1.1e-34 149.8 86 76.7
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 2.6e-34 148.7 87 77.0
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.6e-34 148.7 101 72.3
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 1.3e-33 146.4 82 80.5
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 1.7e-33 146.0 90 74.4
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 8.2e-33 143.7 88 78.4
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 2.4e-32 142.1 92 76.1
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 2.4e-32 142.1 86 74.4
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 4.1e-32 141.4 86 75.6
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 2.6e-26 122.1 90 66.7
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 1.1e-24 116.7 79 67.1
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 1.4e-24 116.3 73 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 1.8e-24 115.9 90 63.3
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 1.8e-24 115.9 86 64.0
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 1.3e-22 109.8 79 65.8
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 6.5e-22 107.5 78 64.1
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.5e-18 96.3 54 77.8
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 6.3e-17 90.9 87 52.9
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 1.7e-09 66.2 44 68.2
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.2e-09 65.9 50 66.0
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 3.7e-09 65.1 32 84.4
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 7.0e-08 60.8 58 48.3


User provided reference genes

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