Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 3.1e-79 298.5 161 100.0
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 4.7e-64 248.1 163 83.4
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 2.4e-63 245.7 163 82.2
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 7.8e-59 230.7 162 77.2
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 8.7e-58 227.3 162 75.9
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 6.2e-56 221.1 160 75.0
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 8.1e-56 220.7 144 81.9
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 1.5e-54 216.5 162 74.7
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 4.5e-54 214.9 162 74.1
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 5.6e-49 198.0 168 66.7
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 1.1e-47 193.7 164 67.7
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 1.8e-47 193.0 167 65.3
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 2.4e-47 192.6 170 67.6
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.1e-47 192.2 167 65.3
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 3.1e-47 192.2 167 65.3
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 5.3e-47 191.4 146 71.9
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 6.9e-47 191.0 146 71.9
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 2.6e-46 189.1 169 66.9
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 5.8e-46 188.0 165 63.0
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 9.9e-46 187.2 162 66.0
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 4.9e-45 184.9 163 65.6
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 6.4e-45 184.5 163 63.8
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 6.4e-45 184.5 154 66.2
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 8.4e-45 184.1 163 62.6
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 8.4e-45 184.1 167 65.9
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 8.4e-45 184.1 167 62.3
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 1.9e-44 183.0 168 63.7
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 4.2e-44 181.8 168 61.9
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 5.5e-44 181.4 168 64.3
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 7.1e-44 181.0 167 64.1
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 7.1e-44 181.0 170 62.9
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 2.1e-43 179.5 174 61.5
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 2.1e-43 179.5 166 61.4
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 6.0e-43 177.9 167 61.1
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 7.9e-43 177.6 167 60.5
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 1.0e-42 177.2 166 61.4
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.3e-42 176.8 166 62.0
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 1.3e-42 176.8 165 64.2
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 3.0e-42 175.6 167 59.3
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 3.0e-42 175.6 168 58.3
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 3.9e-42 175.3 165 60.0
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 3.9e-42 175.3 166 60.8
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.1e-41 173.7 167 60.5
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.5e-41 172.6 165 59.4
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 2.5e-41 172.6 144 66.0
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 2.5e-41 172.6 166 59.6
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.3e-41 172.2 164 60.4
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 3.3e-41 172.2 164 59.8
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 4.3e-41 171.8 166 58.4
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 5.6e-41 171.4 168 57.1
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 5.6e-41 171.4 169 60.9
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 7.4e-41 171.0 166 60.2
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 9.6e-41 170.6 172 57.6
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 9.6e-41 170.6 161 59.6
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 1.3e-40 170.2 156 59.6
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.3e-40 170.2 163 60.7
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 1.3e-40 170.2 163 60.7
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.6e-40 169.9 167 59.3
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 2.8e-40 169.1 170 58.2
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 2.8e-40 169.1 169 56.8
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 2.8e-40 169.1 167 56.9
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 3.7e-40 168.7 167 58.1
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 3.7e-40 168.7 163 57.7
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 4.8e-40 168.3 167 56.9
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 6.2e-40 167.9 164 59.8
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 1.1e-39 167.2 167 56.9
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 1.4e-39 166.8 162 57.4
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 3.1e-39 165.6 163 58.9
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 4.0e-39 165.2 161 55.9
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 5.3e-39 164.9 168 55.4
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 5.3e-39 164.9 113 77.0
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 5.3e-39 164.9 170 56.5
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 6.9e-39 164.5 170 56.5
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 3.4e-38 162.2 160 56.9
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 3.4e-38 162.2 169 53.8
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 4.5e-38 161.8 171 53.2
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 4.5e-38 161.8 150 64.7
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 7.6e-38 161.0 174 53.4
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 7.6e-38 161.0 110 72.7
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 1.0e-37 160.6 153 59.5
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.0e-37 160.6 169 56.8
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 1.3e-37 160.2 166 53.6
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 1.3e-37 160.2 149 57.7
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 1.3e-37 160.2 149 57.7
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 2.2e-37 159.5 173 54.3
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 2.9e-37 159.1 171 54.4
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 3.8e-37 158.7 167 56.9
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 3.8e-37 158.7 174 52.3
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 3.8e-37 158.7 164 54.9
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 3.8e-37 158.7 174 52.3
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 3.8e-37 158.7 164 54.9
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 3.8e-37 158.7 150 60.0
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 3.8e-37 158.7 151 58.9
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 8.4e-37 157.5 171 57.9
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 1.1e-36 157.1 150 62.0
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 1.4e-36 156.8 168 56.0
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.9e-36 156.4 169 55.6
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 5.5e-36 154.8 169 55.0
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 7.1e-36 154.5 169 55.0
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 1.2e-35 153.7 139 60.4
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.6e-35 153.3 169 54.4
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 4.6e-35 151.8 169 51.5
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 1.5e-33 146.7 160 56.9
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 4.3e-33 145.2 167 52.7
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 1.3e-32 143.7 153 55.6
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 1.1e-31 140.6 167 53.3
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 2.0e-30 136.3 164 51.2
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 3.4e-30 135.6 267 37.5
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 1.7e-29 133.3 105 65.7
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 5.0e-29 131.7 105 64.8
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 1.1e-28 130.6 100 67.0
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 3.2e-28 129.0 105 63.8
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 7.2e-28 127.9 181 49.7
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 5.7e-25 118.2 143 46.2
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 7.4e-25 117.9 106 56.6
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 2.2e-24 116.3 80 72.5
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 2.2e-24 116.3 80 72.5
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 4.5e-22 108.6 117 57.3
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 1.3e-21 107.1 112 58.9
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 2.2e-21 106.3 109 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 1.1e-20 104.0 130 43.1
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 3.2e-20 102.4 102 55.9
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 2.1e-19 99.8 117 49.6
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 6.7e-18 94.7 97 52.6
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 4.4e-17 92.0 111 53.2
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 3.1e-15 85.9 71 62.0
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 5.9e-14 81.6 97 55.7
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 1.7e-13 80.1 92 42.4
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 2.2e-13 79.7 56 69.6
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 4.2e-12 75.5 61 59.0
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 6.1e-11 71.6 76 52.6
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 1.8e-10 70.1 49 71.4
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 3.9e-10 68.9 55 63.6
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 1.8e-07 60.1 73 38.4


User provided reference genes

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