Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.6e-247 857.4 435 100.0
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 5.0e-217 757.7 434 89.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.0e-214 750.0 419 91.2
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.1e-213 746.5 418 90.0
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 2.2e-201 705.7 418 85.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 6.8e-198 694.1 418 84.4
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 1.5e-197 693.0 420 84.0
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.8e-195 686.0 420 83.1
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 7.7e-194 680.6 419 83.1
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 7.2e-192 674.1 419 81.1
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 3.1e-182 642.1 420 79.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 8.3e-172 607.4 454 71.6
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 3.2e-171 605.5 422 73.7
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.2e-170 603.6 419 73.0
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.7e-170 602.4 421 73.6
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 6.0e-170 601.3 419 75.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 1.0e-169 600.5 427 72.8
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.1e-168 597.0 419 74.5
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 4.3e-168 595.1 419 73.3
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 7.3e-168 594.3 421 72.9
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 7.3e-168 594.3 428 71.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 4.7e-167 591.7 422 74.4
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 6.2e-167 591.3 420 73.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.1e-166 590.5 420 73.6
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.1e-166 590.5 420 73.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.4e-166 590.1 421 73.2
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.0e-165 586.3 421 71.7
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.6e-165 585.9 420 73.6
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 2.6e-165 585.9 420 73.1
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 3.4e-165 585.5 419 72.3
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 7.5e-165 584.3 420 72.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.9e-165 583.9 419 71.6
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.7e-164 583.2 427 70.7
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.9e-163 579.7 419 72.6
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.2e-162 577.0 419 71.8
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.6e-162 576.6 420 71.4
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 1.0e-161 573.9 421 71.3
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.7e-161 573.2 422 71.1
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 3.0e-161 572.4 419 70.4
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.1e-160 570.5 420 71.9
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.9e-160 569.7 422 70.9
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 3.3e-160 568.9 419 71.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 9.5e-160 567.4 419 69.9
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.8e-159 565.8 422 70.9
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 4.7e-159 565.1 429 70.6
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 6.2e-159 564.7 422 70.9
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.1e-158 562.4 435 68.3
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 3.1e-158 562.4 422 70.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 3.1e-158 562.4 418 69.6
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 8.9e-158 560.8 418 69.6
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 3.4e-157 558.9 419 69.2
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.4e-157 558.9 421 69.6
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 4.4e-157 558.5 419 69.0
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 7.6e-157 557.8 427 67.7
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.3e-156 557.0 426 68.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.7e-156 556.6 418 69.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 2.9e-156 555.8 418 69.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 6.4e-156 554.7 454 65.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.4e-155 553.5 441 69.2
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 2.4e-155 552.7 438 68.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 9.2e-155 550.8 429 67.8
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 2.7e-154 549.3 419 67.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.5e-154 548.9 424 67.7
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.5e-154 548.9 422 68.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.6e-154 548.5 425 68.5
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.7e-153 546.6 419 68.5
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 3.0e-153 545.8 419 69.0
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 8.7e-153 544.3 420 67.4
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-152 543.5 420 67.1
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.5e-152 543.5 421 68.6
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 4.3e-152 542.0 420 66.9
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 4.3e-152 542.0 418 68.4
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 5.6e-152 541.6 499 60.1
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 5.6e-152 541.6 422 66.8
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 9.6e-152 540.8 442 67.2
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.1e-151 539.7 420 66.4
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 2.1e-151 539.7 420 68.1
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 6.2e-151 538.1 420 68.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 8.1e-151 537.7 421 67.0
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.1e-150 537.3 421 67.9
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 3.1e-150 535.8 422 67.1
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.3e-150 535.0 421 66.7
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.0e-150 534.3 423 67.6
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 2.0e-149 533.1 419 67.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.6e-149 532.7 418 67.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.4e-149 532.3 421 67.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 7.6e-149 531.2 425 67.3
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 7.6e-149 531.2 435 66.4
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 9.9e-149 530.8 418 67.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 2.2e-148 529.6 425 67.1
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.9e-148 529.3 419 65.9
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.9e-148 529.3 423 66.4
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 4.9e-148 528.5 421 67.9
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-147 526.6 427 66.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.9e-147 526.6 427 66.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.9e-147 526.6 420 66.4
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 2.4e-147 526.2 427 66.3
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.2e-147 525.8 420 66.4
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.2e-147 525.4 418 66.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.7e-146 522.7 419 66.8
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.3e-145 520.4 427 65.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 1.3e-145 520.4 419 66.8
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.7e-145 520.0 422 67.5
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.7e-145 520.0 427 66.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.5e-144 516.9 419 66.3
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.9e-144 516.5 422 65.6
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.6e-144 515.0 392 68.1
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.4e-142 510.4 421 67.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.4e-142 510.4 420 66.9
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.4e-142 510.4 422 63.7
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 9.0e-142 507.7 427 65.6
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 9.9e-141 504.2 423 65.5
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 3.8e-140 502.3 423 65.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 6.4e-140 501.5 422 65.2
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.0e-137 492.7 421 64.4
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.9e-137 492.3 418 62.7
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 8.7e-137 491.1 490 55.9
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.5e-136 490.3 419 64.7
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.9e-132 476.1 407 63.9
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 2.5e-131 473.0 416 59.4
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.2e-131 472.2 404 63.6
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 9.3e-131 471.1 418 62.4
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 3.9e-129 465.7 383 65.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 6.7e-129 464.9 289 82.0
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.3e-127 460.7 428 59.6
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 4.8e-127 458.8 435 60.5
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.6e-122 442.2 426 58.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.8e-119 432.2 367 64.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 1.8e-118 430.3 445 56.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 9.4e-115 417.9 478 52.9
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.2e-114 417.5 419 53.7
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.0e-105 387.9 438 52.5
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 1.4e-105 387.5 434 51.6
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.1e-102 376.3 286 71.0
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.2e-98 364.4 439 49.9
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.8e-97 360.5 313 61.0
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-94 351.3 278 65.8
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.6e-93 346.7 318 60.1
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 6.5e-92 342.0 426 50.7
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 3.7e-79 299.7 288 59.4
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 5.5e-75 285.8 195 72.8
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.3e-73 280.4 194 72.7
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 5.7e-72 275.8 298 52.3
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.1e-70 271.6 439 41.9
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 4.3e-67 259.6 193 66.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 6.1e-66 255.8 217 63.1
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.9e-65 251.9 190 70.0
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 5.4e-62 242.7 253 55.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 8.9e-57 225.3 152 75.7
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 4.3e-51 206.5 218 57.3
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 3.1e-49 200.3 129 77.5
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.2e-48 198.4 241 50.2
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.4e-48 196.8 171 57.9
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.4e-47 192.6 414 37.2
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 6.4e-47 192.6 171 62.0
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.4e-46 189.5 137 68.6
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.7e-44 184.5 356 35.7
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 2.3e-44 184.1 118 72.9
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.4e-40 170.2 301 37.5
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 4.9e-39 166.4 188 52.1
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 4.2e-38 163.3 242 42.6
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 2.1e-37 161.0 293 36.2
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 5.1e-36 156.4 156 60.9
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.3e-33 146.4 156 53.8
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.6e-32 144.1 130 67.7
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.8e-31 140.2 128 64.1
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 7.9e-29 132.5 102 64.7
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 1.4e-25 121.7 115 65.2
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.4e-25 120.9 76 76.3
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.3e-23 115.2 79 78.5
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.4e-22 110.9 134 50.0
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.1e-20 103.2 73 74.0
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 1.0e-15 89.0 115 52.2
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.1e-14 82.8 51 78.4
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 5.7e-11 73.2 56 71.4
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 9.6e-11 72.4 53 66.0
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.3e-10 72.0 46 73.9
arahy.Tifrunner.gnm1.ann1.6Q3TNQ Arachis hypogaea HOM05D000799 ORTHO05D000629 5.3e-09 66.6 109 41.3
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.0e-08 64.7 41 73.2
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 5.9e-08 63.2 120 35.8
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 2.2e-07 61.2 76 47.4
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 3.2e-06 57.4 148 29.7


User provided reference genes

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