Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.5e-182 643.3 471 100.0
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 5.7e-126 455.3 502 69.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.1e-124 451.1 477 75.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 3.3e-105 386.3 500 59.2
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 9.2e-100 368.2 446 60.1
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 7.8e-99 365.2 477 53.2
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.0e-98 363.2 487 58.5
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.6e-96 356.3 533 52.0
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 6.2e-96 355.5 489 58.9
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.0e-95 352.8 530 52.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.2e-94 351.3 484 65.1
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 9.2e-92 341.7 231 74.0
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.2e-91 341.3 231 74.0
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 1.6e-91 340.9 231 73.6
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.6e-91 340.9 230 71.7
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 2.1e-91 340.5 231 74.0
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 2.7e-91 340.1 231 73.6
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 6.0e-91 339.0 231 73.2
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 7.8e-91 338.6 231 72.3
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.0e-90 338.2 326 65.3
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 1.7e-90 337.4 231 72.3
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.0e-90 336.7 231 72.3
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 3.9e-90 336.3 231 72.7
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.9e-90 336.3 231 71.0
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 3.9e-90 336.3 231 71.0
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.9e-90 336.3 231 71.9
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.9e-90 336.3 496 47.6
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 6.6e-90 335.5 231 71.4
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.6e-90 335.1 231 72.7
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.1e-89 334.7 231 72.3
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 2.5e-89 333.6 231 71.9
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 3.3e-89 333.2 231 70.6
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 3.3e-89 333.2 231 70.6
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 3.3e-89 333.2 231 70.6
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.3e-89 333.2 231 71.0
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 4.3e-89 332.8 500 53.2
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.5e-89 331.6 231 71.4
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.2e-88 331.3 355 56.1
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 2.1e-88 330.5 231 72.3
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.8e-88 330.1 231 71.9
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.6e-88 329.7 231 70.6
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 3.6e-88 329.7 231 70.6
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.6e-88 329.7 231 71.4
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 6.2e-88 328.9 231 70.6
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.1e-87 328.2 231 71.4
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.1e-87 328.2 231 70.1
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-87 327.8 231 71.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.4e-87 327.8 231 71.4
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 1.8e-87 327.4 497 50.9
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.4e-87 327.0 487 60.2
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.4e-87 327.0 231 70.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.1e-87 326.6 232 70.3
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 3.1e-87 326.6 232 70.3
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.1e-87 326.6 232 70.3
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 5.2e-87 325.9 232 69.8
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 6.8e-87 325.5 231 71.0
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 8.9e-87 325.1 232 69.8
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.2e-86 324.7 499 45.1
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.2e-86 324.7 484 47.9
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 1.2e-86 324.7 334 56.3
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 1.5e-86 324.3 484 53.1
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.5e-86 324.3 231 70.1
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.4e-86 322.8 467 50.3
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 5.8e-86 322.4 483 55.7
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 7.6e-86 322.0 231 70.6
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 9.9e-86 321.6 488 49.2
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 9.9e-86 321.6 231 69.7
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.3e-85 321.2 231 68.8
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 1.3e-85 321.2 491 51.9
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.7e-85 320.9 480 48.8
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.9e-85 320.1 229 69.0
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.8e-85 319.7 480 50.8
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 4.9e-85 319.3 231 70.1
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 6.4e-85 318.9 483 58.0
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.4e-84 317.0 236 69.5
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 7.1e-84 315.5 232 69.8
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 7.1e-84 315.5 497 48.1
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-83 314.7 231 70.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-83 313.9 231 68.4
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 2.1e-83 313.9 236 69.1
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 3.5e-83 313.2 231 69.3
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 7.8e-83 312.0 228 68.4
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 7.8e-83 312.0 231 68.0
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 5.1e-82 309.3 232 68.5
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 1.9e-81 307.4 231 66.2
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.9e-81 307.4 231 68.4
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 3.3e-81 306.6 231 68.8
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 5.6e-81 305.8 231 66.2
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 7.3e-81 305.4 497 54.3
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 9.6e-81 305.1 473 50.7
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 3.6e-80 303.1 335 52.8
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 4.7e-80 302.8 231 63.6
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 6.9e-79 298.9 231 64.1
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 3.4e-78 296.6 474 50.4
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 3.4e-78 296.6 231 65.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 3.8e-77 293.1 231 64.9
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 1.4e-76 291.2 231 62.3
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 1.4e-76 291.2 231 64.9
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 4.2e-76 289.7 230 64.3
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.6e-75 287.7 228 63.2
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.7e-75 287.0 231 62.8
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.3e-74 284.6 226 65.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 1.3e-74 284.6 323 49.8
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 1.7e-74 284.3 231 62.3
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 1.7e-74 284.3 231 62.3
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 6.6e-74 282.3 226 65.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 8.7e-74 282.0 231 63.2
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.1e-73 281.6 231 63.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.5e-73 280.4 231 62.8
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 1.3e-72 278.1 229 62.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.6e-72 277.7 231 61.5
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 4.8e-72 276.2 231 59.3
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.1e-71 275.0 213 65.7
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 9.0e-71 271.9 205 64.9
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 9.3e-68 261.9 310 49.4
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.0e-67 259.2 217 57.6
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 2.1e-64 250.8 229 56.3
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 2.9e-61 240.4 218 56.9
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.4e-47 194.9 229 44.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 5.1e-42 176.4 112 75.0
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 2.0e-41 174.5 240 39.6
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 6.3e-40 169.5 237 38.4
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 2.4e-39 167.5 243 39.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 2.0e-38 164.5 222 39.6
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 1.4e-34 151.8 89 77.5
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 3.7e-32 143.7 233 34.8
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.1e-31 140.6 114 61.4
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 5.3e-31 139.8 219 37.4
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 2.6e-30 137.5 228 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 5.9e-30 136.3 216 36.6
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.0e-29 133.3 209 36.4
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 8.8e-26 122.5 205 31.7
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 8.8e-26 122.5 213 34.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 5.9e-22 109.8 160 40.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.3e-21 108.6 224 28.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 7.2e-20 102.8 224 26.8
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.8e-18 98.2 206 30.6
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.2e-16 91.3 67 65.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 2.5e-12 77.8 50 72.0
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 9.4e-12 75.9 124 35.5
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 6.1e-11 73.2 105 41.0
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 8.0e-11 72.8 117 38.5
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.0e-10 72.4 91 40.7
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 3.0e-10 70.9 45 71.1
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 5.2e-10 70.1 108 39.8
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.2e-09 68.9 46 58.7
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.2e-09 68.9 48 56.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 1.5e-09 68.6 197 25.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.3e-08 65.5 179 28.5
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 6.3e-08 63.2 54 40.7
MCO08G346 Micromonas commoda HOM05D004657 ORTHO05D005562 1.4e-07 62.0 146 27.4


User provided reference genes

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