Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6204 Trifolium pratense HOM05D008992 ORTHO05D002272 2.3e-245 852.0 508 100.0
TPR.G6199 Trifolium pratense HOM05D008992 ORTHO05D002272 4.7e-126 455.7 520 60.2
TPR.G6244 Trifolium pratense HOM05D008992 ORTHO05D007974 3.6e-110 402.9 622 50.3
Medtr8g089500 Medicago truncatula HOM05D008992 ORTHO05D002272 1.1e-93 348.2 473 50.7
TPR.G6214 Trifolium pratense HOM05D008992 ORTHO05D002272 4.0e-85 319.7 513 54.2
Ca_03843_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 5.0e-83 312.8 479 49.1
Medtr8g089440 Medicago truncatula HOM05D008992 ORTHO05D002272 5.7e-79 299.3 512 43.0
Psat0s921g0280 Pisum sativum HOM05D008992 ORTHO05D002272 4.5e-76 289.7 465 44.3
Medtr2g006000 Medicago truncatula HOM05D008992 ORTHO05D002272 1.7e-75 287.7 483 44.7
Psat0s3155g0080 Pisum sativum HOM05D008992 ORTHO05D002272 1.8e-72 277.7 467 43.5
Ca_17802_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 8.8e-72 275.4 447 42.7
Medtr8g089480 Medicago truncatula HOM05D008992 ORTHO05D002272 6.3e-70 269.2 458 43.0
Medtr8g089530 Medicago truncatula HOM05D008992 ORTHO05D002272 6.1e-65 252.7 476 40.8
Lj4g0020153 Lotus japonicus HOM05D008992 ORTHO05D002272 2.9e-43 180.6 212 47.6
VMungo0251G0856 Vigna mungo HOM05D008992 ORTHO05D002272 6.5e-43 179.5 262 43.5
Psat7g060160 Pisum sativum HOM05D008992 ORTHO05D002272 3.6e-41 173.7 218 47.2
Ca_16626_v3 Cicer arietinum L. HOM05D008992 ORTHO05D002272 1.4e-40 171.8 370 38.1
Lj4g0010390 Lotus japonicus HOM05D008992 ORTHO05D002272 1.4e-40 171.8 257 43.2
Lj1g0000579 Lotus japonicus HOM05D008992 ORTHO05D002272 1.3e-38 165.2 219 44.7
TPR.G35385 Trifolium pratense HOM05D008992 ORTHO05D002272 1.2e-36 158.7 229 45.9
Lalb_Chr07g0185621 Lupinus albus HOM05D008992 ORTHO05D002272 3.6e-33 147.1 452 30.8
Lj4g0011648 Lotus japonicus HOM05D008992 ORTHO05D002272 1.8e-32 144.8 199 45.2
Medtr4g417290 Medicago truncatula HOM05D008992 ORTHO05D002272 6.8e-32 142.9 232 41.8
arahy.Tifrunner.gnm1.ann1.C8FNMN Arachis hypogaea HOM05D008992 ORTHO05D002272 2.2e-30 137.9 187 43.9
arahy.Tifrunner.gnm1.ann1.1MNX0Y Arachis hypogaea HOM05D008992 ORTHO05D002272 6.4e-30 136.3 187 43.9
Lalb_Chr07g0190491 Lupinus albus HOM05D008992 ORTHO05D002272 7.0e-29 132.9 184 41.3
Medtr8g089540 Medicago truncatula HOM05D008992 ORTHO05D002272 4.3e-26 123.6 154 49.4
Duzib147G0607 Durio zibethinus HOM05D002972 ORTHO05D002272 4.0e-24 117.1 214 36.0
Lalb_Chr12g0204211 Lupinus albus HOM05D008992 ORTHO05D002272 7.5e-23 112.8 184 33.7
Medtr2g022010 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-22 111.3 299 36.8
Medtr8g089435 Medicago truncatula HOM05D008992 ORTHO05D002272 2.2e-22 111.3 203 37.9
Cpa.g.sc6.181 Carica papaya HOM05D002972 ORTHO05D002272 4.9e-22 110.2 247 33.6
Medtr4g417280 Medicago truncatula HOM05D000053 ORTHO05D002272 1.1e-21 109.0 267 33.7
Hma1.2p1_1114F.1_g258730 Hydrangea macrophylla HOM05D002972 ORTHO05D002272 1.0e-19 102.4 232 34.9
COL.COLO4_31049 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.9e-19 100.5 234 32.1
Rhsim08G0123100 Rhododendron simsii HOM05D002972 ORTHO05D002272 3.3e-18 97.4 214 34.1
CSS0037442 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 9.5e-18 95.9 237 32.5
AUR62007622 Chenopodium quinoa HOM05D001706 ORTHO05D001789 3.6e-17 94.0 226 31.0
CAN.G438.50 Capsicum annuum HOM05D002972 ORTHO05D002272 8.1e-17 92.8 223 33.2
Sopen03g039250 Solanum pennellii HOM05D002972 ORTHO05D002272 8.1e-17 92.8 223 34.1
Nitab4.5_0003885g0010 Nicotiana tabacum HOM05D002972 ORTHO05D002272 1.8e-16 91.7 223 33.2
PGSC0003DMG400002638 Solanum tuberosum HOM05D002972 ORTHO05D002272 1.8e-16 91.7 224 33.5
Peaxi162Scf00126g10126 Petunia axillaris HOM05D002972 ORTHO05D002272 3.1e-16 90.9 244 32.0
Thecc.01G020000 Theobroma cacao HOM05D000126 ORTHO05D000085 9.8e-15 85.9 181 31.5
Peaxi162Scf00015g00238 Petunia axillaris HOM05D002972 ORTHO05D002272 1.3e-14 85.5 198 33.3
COL.COLO4_21920 Corchorus olitorius HOM05D000126 ORTHO05D002272 2.9e-14 84.3 185 32.4
COL.COLO4_22003 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.7e-14 84.0 208 32.2
Nitab4.5_0003159g0070 Nicotiana tabacum HOM05D002972 ORTHO05D002272 3.7e-14 84.0 178 35.4
TWI09G0202 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 4.9e-14 83.6 203 27.6
Peaxi162Scf00015g00226 Petunia axillaris HOM05D002972 ORTHO05D002272 6.4e-14 83.2 225 32.4
Sopen03g039260 Solanum pennellii HOM05D002972 ORTHO05D002272 1.4e-13 82.0 250 28.0
COL.COLO4_22001 Corchorus olitorius HOM05D002972 ORTHO05D002272 1.9e-13 81.6 141 38.3
Lj4A209T44 Lonicera japonica HOM05D002972 ORTHO05D002272 1.9e-13 81.6 257 30.7
COL.COLO4_07334 Corchorus olitorius HOM05D002972 ORTHO05D002272 3.2e-13 80.9 168 36.3
Solyc03g120360.1 Solanum lycopersicum HOM05D002972 ORTHO05D002272 5.4e-13 80.1 247 27.1
Duzib052G0730 Durio zibethinus HOM05D002972 ORTHO05D002272 9.2e-13 79.3 224 28.1
CANSAT25G2833 Cannabis sativa HOM05D002972 ORTHO05D002272 1.2e-12 79.0 208 29.3
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 1.2e-12 79.0 204 27.5
ClCG02G004020 Citrullus lanatus HOM05D002972 ORTHO05D002272 1.6e-12 78.6 205 31.7
Gorai.007G195600 Gossypium raimondii HOM05D000126 ORTHO05D000085 2.1e-12 78.2 186 30.6
Psat6g232000 Pisum sativum HOM05D002972 ORTHO05D002272 2.1e-12 78.2 205 29.3
CSS0006608 Camellia sinensis var. sinensis HOM05D002972 ORTHO05D002272 2.7e-12 77.8 199 32.2
Cc07_g10090 Coffea canephora HOM05D002972 ORTHO05D002272 2.7e-12 77.8 236 29.7
PGSC0003DMG400002637 Solanum tuberosum HOM05D002972 ORTHO05D002272 2.7e-12 77.8 233 29.2
CiPaw.05G083100 Carya illinoinensis HOM05D002972 ORTHO05D002272 3.5e-12 77.4 119 38.7
Ciclev10028228m.g Citrus clementina HOM05D002972 ORTHO05D002272 4.6e-12 77.0 200 27.5
Duzib147G1519 Durio zibethinus HOM05D000126 ORTHO05D000085 4.6e-12 77.0 184 28.8
TWI09G0157 Tripterygium wilfordii HOM05D002972 ORTHO05D002272 4.6e-12 77.0 215 27.4
Duzib264G0210 Durio zibethinus HOM05D000126 ORTHO05D000085 1.3e-11 75.5 184 31.5
Thecc.02G058300 Theobroma cacao HOM05D002972 ORTHO05D002272 1.7e-11 75.1 202 27.2
Dinv29033 Davidia involucrata HOM05D002972 ORTHO05D002272 2.3e-11 74.7 178 30.9
Manes.11G096900 Manihot esculenta HOM05D002972 ORTHO05D002272 2.3e-11 74.7 235 26.8
Dinv37647 Davidia involucrata HOM05D002972 ORTHO05D002272 3.9e-11 73.9 184 32.1
Gohir.A11G175900 Gossypium hirsutum HOM05D000126 ORTHO05D000085 3.9e-11 73.9 187 30.5
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.5e-10 72.0 199 26.6
Lj4A209T45 Lonicera japonica HOM05D002972 ORTHO05D002272 1.5e-10 72.0 169 33.1
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.9e-10 71.6 169 31.4
MELO3C020825.2 Cucumis melo HOM05D002972 ORTHO05D002272 1.9e-10 71.6 136 33.8
Eucgr.I01431 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.9e-10 71.6 148 32.4
Manes.01G145200 Manihot esculenta HOM05D000126 ORTHO05D000085 1.9e-10 71.6 132 31.8
COL.COLO4_17354 Corchorus olitorius HOM05D002972 ORTHO05D002272 2.5e-10 71.2 131 32.1
FvH4_2g15450 Fragaria vesca HOM05D002972 ORTHO05D002272 2.5e-10 71.2 203 26.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.5e-10 71.2 202 26.7
FAN27G2301 Fragaria x ananassa HOM05D002972 ORTHO05D002272 2.5e-10 71.2 203 26.6
Potri.004G176100 Populus trichocarpa HOM05D002972 ORTHO05D002272 3.3e-10 70.9 205 27.3
Cpa.g.sc10.98 Carica papaya HOM05D002972 ORTHO05D002272 4.3e-10 70.5 202 27.7
CsaV3_2G016160 Cucumis sativus L. HOM05D002972 ORTHO05D002272 4.3e-10 70.5 169 32.5
Prupe.8G166700 Prunus persica HOM05D002972 ORTHO05D002272 4.3e-10 70.5 225 25.8
CsaV3_7G001090 Cucumis sativus L. HOM05D002972 ORTHO05D002272 5.6e-10 70.1 186 30.6
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 5.6e-10 70.1 149 32.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.6e-10 70.1 202 25.7
MELO3C013346.2 Cucumis melo HOM05D002972 ORTHO05D002272 7.3e-10 69.7 183 31.1
Dinv05661 Davidia involucrata HOM05D002972 ORTHO05D002272 7.3e-10 69.7 165 31.5
Dinv41127 Davidia involucrata HOM05D002972 ORTHO05D002272 1.2e-09 68.9 160 31.2
Gorai.005G254500 Gossypium raimondii HOM05D002972 ORTHO05D002272 1.2e-09 68.9 163 32.5
Ciclev10025208m.g Citrus clementina HOM05D000126 ORTHO05D000085 1.6e-09 68.6 126 34.9
Gohir.A03G205300 Gossypium hirsutum HOM05D002972 ORTHO05D002272 1.6e-09 68.6 171 30.4
Sed0018187 Sechium edule HOM05D002972 ORTHO05D002272 2.1e-09 68.2 144 35.4
Gohir.D02G226600 Gossypium hirsutum HOM05D002972 ORTHO05D002272 2.8e-09 67.8 163 31.9
Glyma.06G003100 Glycine max HOM05D002972 ORTHO05D002272 3.6e-09 67.4 213 24.9
Manes.04G072100 Manihot esculenta HOM05D002972 ORTHO05D002272 4.7e-09 67.0 202 26.7
Hund14010 Selenicereus undatus HOM05D002972 ORTHO05D002272 4.7e-09 67.0 240 25.8
Gohir.A12G036900 Gossypium hirsutum HOM05D002972 ORTHO05D002272 6.2e-09 66.6 150 30.7
Sabra04G0118200 Salix brachista HOM05D002972 ORTHO05D002272 6.2e-09 66.6 205 25.4
arahy.Tifrunner.gnm1.ann1.DENV23 Arachis hypogaea HOM05D002972 ORTHO05D002272 8.1e-09 66.2 157 26.8
Ca_13011_v3 Cicer arietinum L. HOM05D002972 ORTHO05D002272 8.1e-09 66.2 202 24.8
Phvul.009G118800 Phaseolus vulgaris HOM05D002972 ORTHO05D002272 8.1e-09 66.2 144 28.5
Sed0027632 Sechium edule HOM05D002972 ORTHO05D002272 8.1e-09 66.2 148 32.4
Eucgr.I01432 Eucalyptus grandis HOM05D002972 ORTHO05D002272 1.1e-08 65.9 194 28.9
Gorai.008G036800 Gossypium raimondii HOM05D002972 ORTHO05D002272 1.1e-08 65.9 150 30.7
arahy.Tifrunner.gnm1.ann1.8AQR6P Arachis hypogaea HOM05D002972 ORTHO05D002272 1.4e-08 65.5 157 26.8
Haze_02128 Corylus avellana HOM05D002972 ORTHO05D002272 1.4e-08 65.5 174 28.2
Nitab4.5_0000580g0290 Nicotiana tabacum HOM05D012638 ORTHO05D002272 1.8e-08 65.1 135 29.6
Sed0017149 Sechium edule HOM05D002972 ORTHO05D002272 1.8e-08 65.1 244 27.0
CiPaw.06G121300 Carya illinoinensis HOM05D002972 ORTHO05D002272 2.3e-08 64.7 254 24.4
Gohir.D12G035500 Gossypium hirsutum HOM05D002972 ORTHO05D002272 2.3e-08 64.7 150 30.7
MD10G1125400 Malus domestica HOM05D002972 ORTHO05D002272 2.3e-08 64.7 199 25.1
Dinv10222 Davidia involucrata HOM05D002972 ORTHO05D002272 3.1e-08 64.3 130 33.8
Lalb_Chr08g0246731 Lupinus albus HOM05D002972 ORTHO05D002272 4.0e-08 63.9 139 28.1
Lj1g0000965 Lotus japonicus HOM05D002972 ORTHO05D002272 5.2e-08 63.5 184 26.6
MD05G1122800 Malus domestica HOM05D002972 ORTHO05D002272 5.2e-08 63.5 150 30.0
PGR142G3299 Punica granatum HOM05D002972 ORTHO05D002272 5.2e-08 63.5 154 28.6
SalBow6G4808 Salvia bowleyana HOM05D002972 ORTHO05D002272 5.2e-08 63.5 155 31.6
Hund14008 Selenicereus undatus HOM05D002972 ORTHO05D002272 6.8e-08 63.2 209 26.3
BcaC06g36191 Brassica carinata HOM05D002972 ORTHO05D002272 1.2e-07 62.4 205 26.8
C07p06710 Brassica napus HOM05D002972 ORTHO05D002272 1.2e-07 62.4 205 26.8
BolC7t41094H Brassica oleracea HOM05D002972 ORTHO05D002272 1.2e-07 62.4 205 26.8
ECA247G2489 Erigeron canadensis HOM05D000555 ORTHO05D000646 1.2e-07 62.4 124 34.7
Migut.I00843 Erythranthe guttata HOM05D002972 ORTHO05D002272 1.2e-07 62.4 181 27.6
PGR142G3650 Punica granatum HOM05D002972 ORTHO05D002272 1.2e-07 62.4 123 31.7
A07p04220 Brassica napus HOM05D002972 ORTHO05D002272 2.0e-07 61.6 157 30.6
BraA07t28213Z Brassica rapa HOM05D002972 ORTHO05D002272 2.6e-07 61.2 204 27.0
CAN.G774.15 Capsicum annuum HOM05D012638 ORTHO05D002272 2.6e-07 61.2 113 30.1
Cpa.g.sc6.240 Carica papaya HOM05D000126 ORTHO05D002272 2.6e-07 61.2 118 32.2
HanXRQChr02g0043901 Helianthus annuus HOM05D000555 ORTHO05D000646 3.4e-07 60.8 90 37.8
Atru.chr5.3374 Acer truncatum HOM05D002972 ORTHO05D002272 5.8e-07 60.1 135 28.1
BcaC01g00847 Brassica carinata HOM05D002972 ORTHO05D002272 5.8e-07 60.1 107 32.7
C03p85160 Brassica napus HOM05D002972 ORTHO05D002272 5.8e-07 60.1 107 32.7
BolC3t20805H Brassica oleracea HOM05D002972 ORTHO05D002272 5.8e-07 60.1 107 32.7
EL10As8g23886 Beta vulgaris HOM05D002972 ORTHO05D002272 7.6e-07 59.7 216 26.9
AUR62026757 Chenopodium quinoa HOM05D001093 ORTHO05D000743 7.6e-07 59.7 184 29.3
BcaB08g34675 Brassica carinata HOM05D002972 ORTHO05D002272 9.9e-07 59.3 207 28.5
BraA08t33603Z Brassica rapa HOM05D002972 ORTHO05D002272 9.9e-07 59.3 107 32.7
QL11p050942 Quercus lobata HOM05D002972 ORTHO05D002272 9.9e-07 59.3 201 25.9
Glyma.04G003100 Glycine max HOM05D002972 ORTHO05D002272 1.3e-06 58.9 200 23.5
vmacro17724 Vaccinium macrocarpon HOM05D002972 ORTHO05D002272 1.3e-06 58.9 154 29.2
AL3G49660 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 1.7e-06 58.5 144 28.5
CAN.G774.17 Capsicum annuum HOM05D012638 ORTHO05D002272 1.7e-06 58.5 110 30.0
Sp7g32880 Schrenkiella parvula HOM05D002972 ORTHO05D002272 1.7e-06 58.5 126 28.6
A08p16350 Brassica napus HOM05D002972 ORTHO05D002272 2.2e-06 58.2 126 31.0
C03p57600 Brassica napus HOM05D002972 ORTHO05D002272 2.2e-06 58.2 211 27.5
Eucgr.G01782 Eucalyptus grandis HOM05D002972 ORTHO05D002272 2.2e-06 58.2 204 26.0
SalBow1G2737 Salvia bowleyana HOM05D012638 ORTHO05D002272 2.2e-06 58.2 175 25.7
TPR.G38492 Trifolium pratense HOM05D002972 ORTHO05D002272 2.2e-06 58.2 185 27.0
BcaB03g11788 Brassica carinata HOM05D002972 ORTHO05D002272 2.9e-06 57.8 125 31.2
Carub.0006s2749 Capsella rubella HOM05D002972 ORTHO05D002272 2.9e-06 57.8 149 28.9
Ca_15296_v3 Cicer arietinum L. HOM05D002972 ORTHO05D002272 2.9e-06 57.8 194 27.8
Glyma.08G129502 Glycine max HOM05D008992 ORTHO05D002272 2.9e-06 57.8 98 39.8
Nitab4.5_0003441g0060 Nicotiana tabacum HOM05D012638 ORTHO05D002272 2.9e-06 57.8 149 26.8
Psat5g002240 Pisum sativum HOM05D002972 ORTHO05D002272 2.9e-06 57.8 169 29.6
AL7G16110 Arabidopsis lyrata HOM05D002972 ORTHO05D002272 4.9e-06 57.0 107 30.8
ECA236G0425 Erigeron canadensis HOM05D000555 ORTHO05D000646 4.9e-06 57.0 118 28.8
ECA247G2469 Erigeron canadensis HOM05D000555 ORTHO05D000646 4.9e-06 57.0 109 32.1
Lalb_Chr06g0163671 Lupinus albus HOM05D002972 ORTHO05D002272 4.9e-06 57.0 203 26.1
Sp4g00150 Schrenkiella parvula HOM05D002972 ORTHO05D002272 4.9e-06 57.0 223 26.5
PGSC0003DMG401012214 Solanum tuberosum HOM05D012638 ORTHO05D002272 4.9e-06 57.0 160 25.0
Dinv21340 Davidia involucrata HOM05D002972 ORTHO05D002272 6.4e-06 56.6 144 27.1
Sp3g30180 Schrenkiella parvula HOM05D002972 ORTHO05D002272 6.4e-06 56.6 158 29.1
Aa31LG8G14090 Aethionema arabicum HOM05D002972 ORTHO05D002272 8.4e-06 56.2 162 29.0
BcaC01g02973 Brassica carinata HOM05D002972 ORTHO05D002272 8.4e-06 56.2 206 27.2
BolC3t18035H Brassica oleracea HOM05D002972 ORTHO05D002272 8.4e-06 56.2 206 27.2
THA.LOC104819651 Tarenaya hassleriana HOM05D002972 ORTHO05D002272 8.4e-06 56.2 199 24.6


User provided reference genes

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