Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 1.7e-79 299.3 152 100.0
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 5.5e-54 214.5 156 77.6
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 8.8e-52 207.2 152 73.0
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 5.7e-51 204.5 149 71.1
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 5.2e-28 128.3 145 55.9
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 3.4e-27 125.6 146 55.5
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.0e-24 116.3 146 52.7
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 1.4e-20 103.6 155 45.2
Lalb_Chr12g0203981 Lupinus albus HOM05D008176 ORTHO05D004477 4.0e-20 102.1 143 53.1
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 5.2e-20 101.7 143 48.3
VMungo0251G0397 Vigna mungo HOM05D008176 ORTHO05D004477 8.8e-20 100.9 151 48.3
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 2.6e-19 99.4 151 41.7
Lalb_Chr11g0075471 Lupinus albus HOM05D008176 ORTHO05D004477 5.9e-16 88.2 149 40.3
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 7.8e-16 87.8 137 43.8
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.3e-15 87.0 146 41.8
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 2.3e-15 86.3 135 45.2
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 6.6e-15 84.7 155 41.3
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 4.3e-14 82.0 137 40.9
Psat5g090880 Pisum sativum HOM05D008176 ORTHO05D004477 1.2e-13 80.5 153 39.2
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.6e-13 80.1 143 43.4
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 6.1e-13 78.2 140 40.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 1.5e-11 73.6 132 42.4
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 3.4e-11 72.4 146 43.8
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 1.3e-10 70.5 138 39.9
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 3.7e-10 68.9 151 36.4
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 3.7e-10 68.9 152 36.8
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 8.3e-10 67.8 144 37.5
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.4e-09 66.2 145 33.8
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.1e-09 65.5 144 35.4
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 7.0e-09 64.7 130 39.2
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.2e-08 63.9 142 34.5
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.6e-08 63.5 146 35.6
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 1.6e-08 63.5 153 35.9
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.6e-08 63.5 134 40.3
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.0e-08 63.2 122 42.6
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.7e-08 62.8 142 34.5
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.5e-08 62.4 157 35.0
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 3.5e-08 62.4 158 33.5
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.6e-08 62.0 157 34.4
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 5.9e-08 61.6 151 36.4
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 7.8e-08 61.2 149 36.2
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 1.0e-07 60.8 154 33.8
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.3e-07 60.5 136 35.3
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 1.3e-07 60.5 136 35.3
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 1.3e-07 60.5 137 38.0
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.3e-07 60.5 137 37.2
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.7e-07 60.1 140 37.9
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.7e-07 60.1 133 36.1
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.0e-07 59.3 164 33.5
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 6.6e-07 58.2 160 34.4
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 6.6e-07 58.2 155 34.8
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 8.6e-07 57.8 154 33.8
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 8.6e-07 57.8 136 33.8
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.1e-06 57.4 136 33.8
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.5e-06 56.2 169 35.5
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 3.3e-06 55.8 169 34.9
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 3.3e-06 55.8 140 35.7
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 4.3e-06 55.5 146 31.5
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 4.3e-06 55.5 133 34.6
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 5.6e-06 55.1 152 34.9
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 5.6e-06 55.1 154 31.8
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 7.3e-06 54.7 152 32.9


User provided reference genes

Program Settings