Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 5.9e-190 667.5 380 100.0
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 4.3e-148 528.5 384 76.3
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 2.1e-142 509.6 386 75.4
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 4.0e-138 495.4 382 70.4
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.5e-124 449.5 376 65.4
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.6e-123 446.8 371 66.3
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 8.2e-123 444.5 372 67.2
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 4.0e-122 442.2 367 64.9
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.3e-120 437.2 376 64.1
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 9.7e-116 421.0 367 62.9
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 4.1e-114 415.6 385 60.3
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 7.7e-113 411.4 373 60.3
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 4.2e-111 405.6 353 61.8
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 4.2e-111 405.6 353 61.8
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.0e-109 401.0 384 58.6
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 3.0e-109 399.4 367 61.0
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 3.0e-109 399.4 387 58.9
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 3.0e-109 399.4 386 59.1
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 2.5e-108 396.4 370 59.5
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.8e-107 392.9 359 59.1
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 2.4e-106 389.8 354 60.2
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 5.3e-106 388.7 380 57.6
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 2.9e-104 382.9 384 58.6
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 5.0e-104 382.1 373 56.6
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 8.5e-104 381.3 360 57.8
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.1e-103 380.9 359 58.2
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.9e-103 380.2 359 60.4
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.2e-103 379.0 367 57.8
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 7.2e-103 378.3 359 59.9
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 9.4e-103 377.9 376 57.7
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.6e-102 377.1 368 57.3
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.1e-102 376.7 382 56.0
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.1e-102 376.7 382 56.0
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.1e-102 376.7 382 56.0
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 2.1e-102 376.7 382 56.0
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 3.6e-102 375.9 364 56.9
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 4.7e-102 375.6 382 56.0
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 7.9e-102 374.8 369 57.2
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 7.9e-102 374.8 367 57.8
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 9.7e-100 367.9 365 56.7
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.7e-99 367.1 347 59.7
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 2.2e-99 366.7 362 56.4
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 8.2e-99 364.8 380 55.5
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 7.0e-98 361.7 368 55.2
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 9.1e-98 361.3 377 55.2
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 9.1e-98 361.3 391 53.5
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 1.5e-97 360.5 365 54.5
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 1.5e-97 360.5 385 53.8
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 4.5e-97 359.0 373 53.9
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 7.7e-97 358.2 380 52.6
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.7e-96 357.1 376 52.9
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 2.2e-96 356.7 392 52.8
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 2.2e-96 356.7 379 52.2
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 4.2e-95 352.4 378 54.0
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 7.2e-95 351.7 366 53.3
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 6.1e-94 348.6 377 54.6
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.8e-93 347.1 384 53.1
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 5.2e-93 345.5 383 52.5
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.5e-92 344.0 363 53.2
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 1.5e-92 344.0 373 51.2
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.0e-92 343.6 377 50.4
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.6e-92 343.2 364 54.7
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 3.3e-92 342.8 359 55.2
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 3.3e-92 342.8 371 55.0
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 4.4e-92 342.4 379 54.1
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 4.4e-92 342.4 372 55.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 7.4e-92 341.7 374 53.7
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 9.7e-92 341.3 384 52.9
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 2.2e-91 340.1 372 54.8
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 2.8e-91 339.7 370 53.2
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 2.8e-91 339.7 367 52.9
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 2.8e-91 339.7 386 53.4
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 3.7e-91 339.3 366 51.4
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 6.3e-91 338.6 365 51.0
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 8.2e-91 338.2 384 50.3
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.1e-90 337.8 365 51.0
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 1.4e-90 337.4 381 52.8
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 5.3e-90 335.5 363 51.5
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 7.0e-90 335.1 403 49.6
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-89 334.3 381 52.2
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 4.5e-89 332.4 364 55.2
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.3e-88 330.9 359 52.1
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.7e-88 330.5 367 52.0
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 3.2e-87 326.2 378 51.1
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 5.5e-87 325.5 361 51.2
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 9.4e-87 324.7 370 48.1
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.0e-86 321.6 388 50.0
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 8.0e-86 321.6 388 50.0
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 1.5e-84 317.4 363 49.0
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.3e-83 314.3 356 50.3
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 1.1e-82 311.2 371 51.5
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 4.1e-82 309.3 373 49.6
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 5.3e-82 308.9 355 51.8
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.3e-82 308.9 384 50.8
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 3.5e-81 306.2 351 51.0
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 1.8e-77 293.9 336 52.4
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 3.4e-76 289.7 381 43.8
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.3e-75 287.7 384 46.4
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 5.4e-74 282.3 245 59.2
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 2.1e-70 270.4 220 62.7
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.8e-69 267.3 355 43.9
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 2.6e-68 263.5 369 43.4
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 1.0e-64 251.5 194 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 1.0e-61 241.5 364 39.6
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 4.4e-60 236.1 369 40.4
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 9.2e-58 228.4 351 41.6
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 1.3e-56 224.6 364 40.7
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 1.2e-54 218.0 248 54.0
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.2e-52 211.5 232 49.6
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 9.8e-52 208.4 156 65.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 2.4e-50 203.8 369 36.3
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 4.0e-45 186.4 155 58.7
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 2.0e-44 184.1 340 41.8
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 9.9e-44 181.8 355 35.8
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 5.4e-42 176.0 389 31.4
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 2.4e-37 160.6 340 38.8
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 3.8e-35 153.3 237 43.0
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.9e-34 151.0 359 29.8
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.4e-34 150.6 260 41.5
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 1.6e-33 147.9 349 35.0
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 1.9e-26 124.4 167 49.7
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 7.8e-25 119.0 355 24.8
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 8.7e-24 115.5 110 53.6
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 1.1e-23 115.2 132 55.3
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.8e-21 107.8 89 64.0
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.9e-18 97.8 234 36.3
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 9.3e-18 95.5 86 55.8
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 9.3e-18 95.5 94 52.1
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 8.7e-16 89.0 145 44.1
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 1.8e-13 81.3 45 75.6
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 7.9e-09 65.9 58 51.7
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 4.8e-06 56.6 152 38.8
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 4.8e-06 56.6 125 24.0


User provided reference genes

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