Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.5e-139 498.4 283 100.0
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 7.0e-103 377.9 262 81.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.4e-98 363.6 257 79.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 5.0e-85 318.5 257 72.0
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.1e-71 274.2 258 65.9
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 3.3e-68 262.7 271 62.4
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 4.9e-64 248.8 236 65.3
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 6.0e-62 241.9 273 56.4
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 6.0e-62 241.9 273 56.4
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.0e-61 241.1 264 60.6
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.5e-60 236.5 273 55.7
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.9e-56 223.0 275 55.6
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 4.9e-56 222.2 221 64.3
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.9e-55 220.3 213 62.0
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.2e-54 217.6 208 60.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.6e-54 217.2 268 53.7
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.0e-53 214.5 207 65.2
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.1e-52 211.1 261 54.0
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.5e-52 210.7 217 59.9
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.6e-52 208.8 212 59.4
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.8e-51 206.5 267 55.1
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 6.2e-51 205.3 278 52.2
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 6.2e-51 205.3 210 60.5
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 6.2e-51 205.3 270 51.5
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 8.1e-51 204.9 232 54.3
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 8.1e-51 204.9 267 55.1
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.1e-50 204.5 265 51.3
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.4e-50 204.1 256 54.3
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 2.4e-50 203.4 251 51.0
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.1e-50 203.0 264 53.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.1e-50 203.0 267 52.1
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 5.2e-50 202.2 225 58.7
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 6.9e-50 201.8 250 53.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 9.0e-50 201.4 257 52.1
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 9.0e-50 201.4 264 52.7
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 9.0e-50 201.4 207 59.9
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.2e-49 201.1 212 60.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.5e-49 200.7 260 51.5
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.0e-49 200.3 281 50.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.4e-49 199.5 219 57.1
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.4e-49 199.5 253 51.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 4.4e-49 199.1 264 51.1
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 4.4e-49 199.1 237 51.5
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.8e-49 198.7 255 55.3
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.8e-49 198.7 192 61.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 7.6e-49 198.4 239 55.2
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.3e-48 197.6 270 50.7
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.9e-48 196.4 300 48.7
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.8e-48 196.1 206 59.7
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 3.8e-48 196.1 216 57.9
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 4.9e-48 195.7 242 52.9
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 4.9e-48 195.7 249 53.4
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 6.4e-48 195.3 222 58.6
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.4e-48 195.3 222 58.6
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 8.4e-48 194.9 282 50.4
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.1e-47 194.5 302 49.3
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.4e-47 194.1 276 48.6
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.9e-47 193.7 274 49.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.4e-47 193.4 302 48.0
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.4e-47 193.4 203 55.2
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 4.2e-47 192.6 268 51.9
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.2e-46 191.0 238 53.4
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.1e-46 190.3 212 55.7
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.1e-46 190.3 252 52.8
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.7e-46 189.9 229 53.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 4.6e-46 189.1 208 56.2
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 7.8e-46 188.3 229 56.8
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.3e-45 187.6 224 54.0
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.3e-45 186.8 191 59.7
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.0e-45 186.4 219 55.7
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.9e-45 186.0 211 53.6
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 6.6e-45 185.3 211 53.6
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 6.6e-45 185.3 245 51.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.1e-44 184.5 256 50.0
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.1e-44 184.5 217 52.5
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.5e-44 184.1 171 66.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.5e-44 184.1 252 50.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.9e-44 183.7 246 48.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.9e-44 183.7 205 56.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.5e-44 183.3 244 50.4
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.5e-44 183.3 256 49.6
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 2.5e-44 183.3 214 53.3
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 2.5e-44 183.3 214 53.3
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.3e-44 183.0 269 49.1
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 7.3e-44 181.8 161 64.6
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 9.6e-44 181.4 208 52.9
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.3e-43 181.0 206 55.8
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.6e-43 180.6 226 50.9
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.6e-43 180.6 192 59.9
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.1e-43 180.3 225 49.8
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 6.2e-43 178.7 229 50.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 8.1e-43 178.3 193 57.0
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 8.1e-43 178.3 193 57.0
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 8.1e-43 178.3 206 53.4
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 2.4e-42 176.8 216 55.1
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.1e-42 176.4 169 63.9
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 5.3e-42 175.6 255 47.8
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.5e-41 174.1 272 47.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.5e-41 174.1 203 52.7
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.0e-41 173.7 203 52.7
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.4e-41 172.9 229 51.1
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.9e-40 169.9 264 43.9
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.4e-39 166.8 204 53.4
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.2e-39 166.4 383 35.5
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 4.2e-39 166.0 169 58.6
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.2e-39 166.0 158 60.8
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 9.3e-39 164.9 245 46.1
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 9.3e-39 164.9 276 47.5
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 2.1e-38 163.7 250 45.6
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 4.6e-38 162.5 228 48.7
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.0e-37 161.4 216 53.7
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 5.1e-37 159.1 207 52.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 4.3e-36 156.0 129 70.5
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.3e-35 154.5 258 46.1
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.1e-35 153.7 215 52.1
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 8.1e-35 151.8 192 52.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.1e-34 151.4 141 63.1
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.8e-34 150.6 120 69.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 2.4e-34 150.2 110 77.3
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.6e-33 146.7 216 45.8
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 2.6e-33 146.7 135 67.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 8.4e-32 141.7 352 37.2
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 3.9e-29 132.9 123 65.0
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.9e-29 132.9 181 47.0
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 6.7e-29 132.1 156 51.3
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-28 131.3 112 67.0
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.9e-28 130.6 178 46.1
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.7e-27 126.3 189 49.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 8.2e-27 125.2 88 79.5
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 4.0e-26 122.9 197 46.7
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.4e-23 114.4 140 57.9
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.7e-22 110.2 119 58.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.0e-21 106.7 141 47.5
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.3e-20 102.8 106 55.7
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.5e-16 89.0 102 55.9
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 8.5e-16 88.6 119 42.0
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.2e-15 86.7 116 46.6
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-14 84.7 61 77.0
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.7e-14 83.6 61 78.7
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 2.7e-14 83.6 198 33.8
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 7.9e-14 82.0 210 34.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.0e-13 81.6 97 53.6
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.3e-12 76.6 173 34.1
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.3e-12 76.6 117 49.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.3e-12 76.3 106 52.8
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.2e-11 72.0 46 84.8
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.3e-08 64.7 49 77.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.2e-07 60.1 106 45.3


User provided reference genes

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