Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G617 Trifolium pratense HOM05D000390 ORTHO05D025866 5.3e-33 143.7 68 100.0
TPR.G29400 Trifolium pratense HOM05D000390 ORTHO05D000577 4.2e-30 134.0 68 91.2
Medtr8g038370 Medicago truncatula HOM05D000390 ORTHO05D000577 5.9e-24 113.6 69 81.2
Ca_10474_v3 Cicer arietinum L. HOM05D000390 ORTHO05D000577 1.7e-23 112.1 69 79.7
Psat0s1718g0240 Pisum sativum HOM05D000390 ORTHO05D000577 9.4e-22 106.3 69 73.9
Lalb_Chr03g0032841 Lupinus albus HOM05D000390 ORTHO05D000577 1.6e-21 105.5 69 73.9
Lalb_Chr19g0132361 Lupinus albus HOM05D000390 ORTHO05D000577 1.6e-21 105.5 69 72.5
Glyma.13G198800 Glycine max HOM05D000390 ORTHO05D000577 2.1e-21 105.1 69 75.4
Lalb_Chr01g0007821 Lupinus albus HOM05D000390 ORTHO05D000577 2.1e-21 105.1 69 72.5
Glyma.15G237300 Glycine max HOM05D000390 ORTHO05D000577 6.1e-21 103.6 69 73.9
VMungo1127G2005 Vigna mungo HOM05D000390 ORTHO05D000002 8.0e-21 103.2 69 73.9
Phvul.011G207900 Phaseolus vulgaris HOM05D000390 ORTHO05D000577 1.4e-20 102.4 69 73.9
arahy.Tifrunner.gnm1.ann1.EW9U9R Arachis hypogaea HOM05D000390 ORTHO05D000577 4.0e-20 100.9 69 69.6
Psat5g219360 Pisum sativum HOM05D000390 ORTHO05D000577 6.8e-20 100.1 69 68.1
arahy.Tifrunner.gnm1.ann1.L7IXEZ Arachis hypogaea HOM05D000390 ORTHO05D000577 8.8e-20 99.8 69 68.1
TPR.G17802 Trifolium pratense HOM05D000390 ORTHO05D000577 2.0e-19 98.6 69 66.7
Medtr3g017590 Medicago truncatula HOM05D000390 ORTHO05D000577 3.4e-19 97.8 69 66.7
Phvul.005G029400 Phaseolus vulgaris HOM05D000390 ORTHO05D000577 3.4e-19 97.8 69 65.2
VMungo1080G1247 Vigna mungo HOM05D000390 ORTHO05D000577 4.4e-19 97.4 69 68.1
Manes.11G004100 Manihot esculenta HOM05D000390 ORTHO05D000577 4.8e-18 94.0 70 67.1
Lj3g0022164 Lotus japonicus HOM05D000390 ORTHO05D000577 1.1e-17 92.8 69 68.1
vmacro13745 Vaccinium macrocarpon HOM05D000390 ORTHO05D000577 2.4e-17 91.7 70 67.1
vmacro22864 Vaccinium macrocarpon HOM05D000390 ORTHO05D000577 2.4e-17 91.7 70 67.1
Sabra03G0147900 Salix brachista HOM05D000390 ORTHO05D000577 1.2e-16 89.4 70 64.3
CiPaw.14G006700 Carya illinoinensis HOM05D000390 ORTHO05D000577 2.0e-16 88.6 69 60.9
Potri.003G198600 Populus trichocarpa HOM05D000390 ORTHO05D000577 2.0e-16 88.6 70 64.3
Potri.T126006 Populus trichocarpa HOM05D000390 ORTHO05D000577 2.0e-16 88.6 70 64.3
QL04p014510 Quercus lobata HOM05D000390 ORTHO05D000577 4.5e-16 87.4 70 61.4
QL04p014874 Quercus lobata HOM05D000390 ORTHO05D000577 4.5e-16 87.4 70 61.4
TWI63G1178 Tripterygium wilfordii HOM05D000390 ORTHO05D000577 4.5e-16 87.4 70 62.9
CiPaw.13G012400 Carya illinoinensis HOM05D000390 ORTHO05D000577 5.9e-16 87.0 70 61.4
Rhsim07G0066300 Rhododendron simsii HOM05D000390 ORTHO05D000577 7.7e-16 86.7 70 62.9
RhsimUnG0111700 Rhododendron simsii HOM05D000390 ORTHO05D025866 7.7e-16 86.7 70 62.9
Haze_03070 Corylus avellana HOM05D000390 ORTHO05D000577 1.0e-15 86.3 70 62.9
Eucgr.G03243 Eucalyptus grandis HOM05D000390 ORTHO05D000577 1.0e-15 86.3 70 60.0
CsaV3_5G036660 Cucumis sativus L. HOM05D000390 ORTHO05D000577 1.7e-15 85.5 69 56.5
PGR031G3397 Punica granatum HOM05D000390 ORTHO05D000577 1.7e-15 85.5 70 60.0
GSVIVG01000648001 Vitis vinifera HOM05D000390 ORTHO05D000577 1.7e-15 85.5 70 61.4
CANSAT56G4199 Cannabis sativa HOM05D000390 ORTHO05D000577 2.2e-15 85.1 70 57.1
MELO3C012463.2 Cucumis melo HOM05D000390 ORTHO05D000577 2.2e-15 85.1 69 56.5
SGA_v2.0_scaffold232G43509 Striga asiatica HOM05D000390 ORTHO05D000577 2.2e-15 85.1 70 57.1
Duzib128G0125 Durio zibethinus HOM05D000390 ORTHO05D000577 5.0e-15 84.0 70 61.4
Hma1.2p1_1396F.1_g280600 Hydrangea macrophylla HOM05D000390 ORTHO05D000577 5.0e-15 84.0 70 58.6
MD07G1037000 Malus domestica HOM05D000390 ORTHO05D000577 6.5e-15 83.6 70 58.6
Dinv09258 Davidia involucrata HOM05D000390 ORTHO05D000577 1.1e-14 82.8 70 60.0
ClCG05G026730 Citrullus lanatus HOM05D000390 ORTHO05D000577 1.9e-14 82.0 70 55.7
Dinv32035 Davidia involucrata HOM05D000390 ORTHO05D000577 1.9e-14 82.0 70 57.1
Duzib114G0425 Durio zibethinus HOM05D000390 ORTHO05D000577 1.9e-14 82.0 70 61.4
Duzib114G0825 Durio zibethinus HOM05D000390 ORTHO05D000577 1.9e-14 82.0 70 61.4
Sc11g0006550 Simmondsia chinensis HOM05D000390 ORTHO05D000577 1.9e-14 82.0 70 57.1
TAR369G0973 Trochodendron aralioides HOM05D000390 ORTHO05D000577 2.5e-14 81.6 70 55.7
ClCG01G007730 Citrullus lanatus HOM05D000390 ORTHO05D000577 4.2e-14 80.9 70 55.7
MD02G1290000 Malus domestica HOM05D000390 ORTHO05D000577 5.5e-14 80.5 70 58.6
Nn2g14897 Nelumbo nucifera HOM05D000390 ORTHO05D000577 5.5e-14 80.5 70 57.1
Cpa.g.sc223.11 Carica papaya HOM05D000390 ORTHO05D000577 7.2e-14 80.1 70 55.7
Prupe.2G032500 Prunus persica HOM05D000390 ORTHO05D000577 7.2e-14 80.1 70 57.1
CSS0044387 Camellia sinensis var. sinensis HOM05D000390 ORTHO05D000577 9.4e-14 79.7 70 60.0
MBI13_g01616_MAGBIO Magnolia biondii HOM05D000390 ORTHO05D000577 9.4e-14 79.7 69 55.1
TAR636G1219 Trochodendron aralioides HOM05D000390 ORTHO05D000577 9.4e-14 79.7 70 57.1
TAR636G1478 Trochodendron aralioides HOM05D000390 ORTHO05D000577 9.4e-14 79.7 70 57.1
Gohir.D10G189900 Gossypium hirsutum HOM05D000390 ORTHO05D000577 1.2e-13 79.3 70 60.0
Gorai.011G213000 Gossypium raimondii HOM05D000390 ORTHO05D000577 1.2e-13 79.3 70 60.0
COL.COLO4_21462 Corchorus olitorius HOM05D000390 ORTHO05D000577 1.6e-13 79.0 70 58.6
Sed0009309 Sechium edule HOM05D000390 ORTHO05D000577 1.6e-13 79.0 70 51.4
Sed0019159 Sechium edule HOM05D000390 ORTHO05D000577 1.6e-13 79.0 70 54.3
Thecc.10G166000 Theobroma cacao HOM05D000390 ORTHO05D000577 1.6e-13 79.0 70 60.0
Duzib106G2022 Durio zibethinus HOM05D000390 ORTHO05D000577 2.1e-13 78.6 70 58.6
Lj3g0010243 Lotus japonicus HOM05D000390 ORTHO05D000577 2.1e-13 78.6 69 56.5
Gohir.A05G281100 Gossypium hirsutum HOM05D000390 ORTHO05D000577 2.7e-13 78.2 70 58.6
Gorai.009G296600 Gossypium raimondii HOM05D000390 ORTHO05D000577 2.7e-13 78.2 70 58.6
Medtr8g038350 Medicago truncatula HOM05D000390 ORTHO05D025866 2.7e-13 78.2 53 71.7
Nitab4.5_0004615g0100 Nicotiana tabacum HOM05D000390 ORTHO05D000577 2.7e-13 78.2 70 55.7
MELO3C005123.2 Cucumis melo HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 54.3
CsaV3_5G024810 Cucumis sativus L. HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 54.3
Gohir.A10G183100 Gossypium hirsutum HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 58.6
Lj7A581T55 Lonicera japonica HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 54.3
Sed0004916 Sechium edule HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 55.7
SGA_v2.0_scaffold43G16331 Striga asiatica HOM05D000390 ORTHO05D000577 3.6e-13 77.8 70 51.4
CAN.G79.38 Capsicum annuum HOM05D000390 ORTHO05D000577 4.7e-13 77.4 70 55.7
Gohir.D05G283011 Gossypium hirsutum HOM05D000390 ORTHO05D000577 4.7e-13 77.4 70 58.6
Ca_03310_v3 Cicer arietinum L. HOM05D000390 ORTHO05D000577 6.1e-13 77.0 61 63.9
Nitab4.5_0001225g0070 Nicotiana tabacum HOM05D000390 ORTHO05D000577 6.1e-13 77.0 70 55.7
unitig_899.g15580 Utricularia gibba HOM05D000390 ORTHO05D000577 6.1e-13 77.0 71 53.5
Atru.chr12.1380 Acer truncatum HOM05D000390 ORTHO05D000577 8.0e-13 76.6 71 56.3
Sopen02g019030 Solanum pennellii HOM05D000390 ORTHO05D000577 8.0e-13 76.6 70 54.3
Migut.B01219 Erythranthe guttata HOM05D000390 ORTHO05D000577 1.0e-12 76.3 70 54.3
Sed0026744 Sechium edule HOM05D000390 ORTHO05D000577 1.0e-12 76.3 70 52.9
MSTRG.20522 Avicennia marina HOM05D000390 ORTHO05D000577 1.4e-12 75.9 70 52.9
Ciclev10005495m.g Citrus clementina HOM05D000390 ORTHO05D000577 1.4e-12 75.9 72 52.8
Cc00_g04430 Coffea canephora HOM05D000390 ORTHO05D000577 1.8e-12 75.5 70 55.7
PGSC0003DMG400021123 Solanum tuberosum HOM05D000390 ORTHO05D000577 1.8e-12 75.5 70 54.3
EL10Ac2g02823 Beta vulgaris HOM05D000390 ORTHO05D000577 2.3e-12 75.1 70 51.4
Hund13344 Selenicereus undatus HOM05D000390 ORTHO05D000577 2.3e-12 75.1 70 52.9
Nn7g36631 Nelumbo nucifera HOM05D000390 ORTHO05D000577 3.0e-12 74.7 70 55.7
THA.LOC104826721 Tarenaya hassleriana HOM05D000390 ORTHO05D000577 3.0e-12 74.7 70 55.7
TWI38G0737 Tripterygium wilfordii HOM05D000390 ORTHO05D000577 3.0e-12 74.7 70 57.1
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 4.0e-12 74.3 70 52.9
MSTRG.16993 Avicennia marina HOM05D000390 ORTHO05D000577 5.2e-12 73.9 70 51.4
DCAR_006597 Daucus carota HOM05D000390 ORTHO05D000577 5.2e-12 73.9 70 52.9
Ah.12g062940 Amaranthus hybridus HOM05D000390 ORTHO05D000577 6.8e-12 73.6 70 51.4
AUR62037201 Chenopodium quinoa HOM05D000390 ORTHO05D000577 8.8e-12 73.2 70 54.3
Migut.N01832 Erythranthe guttata HOM05D000390 ORTHO05D000577 8.8e-12 73.2 70 50.0
MSTRG.5062 Avicennia marina HOM05D000390 ORTHO05D000577 1.2e-11 72.8 69 49.3
Os07g0659800 Oryza sativa ssp. japonica HOM05D000390 ORTHO05D000577 1.2e-11 72.8 53 60.4
Psat6g088800 Pisum sativum HOM05D000390 ORTHO05D025866 2.6e-11 71.6 55 63.6
AUR62026848 Chenopodium quinoa HOM05D000390 ORTHO05D000577 3.4e-11 71.2 70 52.9
Oeu015687.1 Olea europaea HOM05D000390 ORTHO05D000577 4.4e-11 70.9 70 52.9
Gorai.013G005100 Gossypium raimondii HOM05D000390 ORTHO05D000577 7.5e-11 70.1 70 52.9
Actinidia02258 Actinidia chinensis HOM05D000390 ORTHO05D000577 1.3e-10 69.3 70 55.7
ECA248G1789 Erigeron canadensis HOM05D000390 ORTHO05D000577 1.3e-10 69.3 55 61.8
Potri.001G026200 Populus trichocarpa HOM05D000390 ORTHO05D000577 1.7e-10 68.9 53 58.5
Gohir.D13G004700 Gossypium hirsutum HOM05D000390 ORTHO05D000577 2.2e-10 68.6 70 51.4
Lsat_1_v5_gn_1_113921 Lactuca sativa HOM05D000390 ORTHO05D000577 3.7e-10 67.8 65 55.4
unitig_0.g2287 Utricularia gibba HOM05D000390 ORTHO05D000577 6.3e-10 67.0 63 54.0
ATR0075G012 Amborella trichopoda HOM05D000390 ORTHO05D000577 8.3e-10 66.6 70 48.6
Gohir.A13G005000 Gossypium hirsutum HOM05D000390 ORTHO05D000577 1.4e-09 65.9 70 50.0
Os03g0356414 Oryza sativa ssp. japonica HOM05D000390 ORTHO05D000577 1.4e-09 65.9 57 56.1
Zm00001eb329840 Zea mays HOM05D000390 ORTHO05D000577 1.4e-09 65.9 53 54.7
Zm00001eb017210 Zea mays HOM05D000390 ORTHO05D000577 1.8e-09 65.5 53 58.5
PSO339G1185 Papaver somniferum HOM05D000390 ORTHO05D000577 2.4e-09 65.1 69 46.4
Solyc02g069880.4 Solanum lycopersicum HOM05D000390 ORTHO05D000577 2.4e-09 65.1 44 65.9
PSO384G3139 Papaver somniferum HOM05D000390 ORTHO05D000577 4.5e-08 60.8 69 44.9
Aqoxy2G00341 Aquilegia oxysepala HOM05D000390 ORTHO05D000577 3.8e-07 57.8 70 45.7
HanXRQChr11g0341841 Helianthus annuus HOM05D000390 ORTHO05D000577 2.5e-06 55.1 38 63.2
SalBow5G0472 Salvia bowleyana HOM05D000390 ORTHO05D000577 9.5e-06 53.1 43 58.1


User provided reference genes

Program Settings