Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 1.1e-51 206.5 111 100.0
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.7e-34 148.7 113 70.8
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 1.8e-33 146.0 112 71.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 1.8e-33 146.0 88 84.1
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 1.9e-32 142.5 113 69.0
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 5.6e-32 141.0 112 69.6
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 2.1e-31 139.0 113 66.4
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.4e-30 136.3 111 64.9
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 3.1e-30 135.2 111 64.9
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 4.0e-30 134.8 112 66.1
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 7.6e-29 130.6 116 64.7
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.7e-28 129.4 114 66.7
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 2.2e-28 129.0 113 64.6
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 2.9e-28 128.6 113 64.6
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 6.0e-26 120.9 112 63.4
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.0e-25 120.2 111 62.2
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 3.7e-23 111.7 114 56.1
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.4e-22 109.8 110 58.2
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.1e-19 100.1 96 57.3
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 2.1e-18 95.9 90 57.8
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 6.7e-17 90.9 111 46.8
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 3.3e-16 88.6 113 47.8
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.3e-16 88.6 113 47.8
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.3e-16 88.6 113 47.8
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.3e-16 88.2 113 48.7
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 4.3e-16 88.2 103 49.5
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 5.7e-16 87.8 110 44.5
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.6e-15 86.3 104 48.1
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 2.2e-15 85.9 113 47.8
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 8.2e-15 84.0 115 45.2
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 5.3e-14 81.3 111 45.9
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 6.9e-14 80.9 79 53.2
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 3.4e-13 78.6 109 47.7
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 1.0e-12 77.0 109 43.1
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.3e-12 76.6 103 42.7
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.9e-12 75.5 111 45.9
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.8e-12 75.1 92 46.7
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 8.5e-12 73.9 85 44.7
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 3.2e-11 72.0 55 63.6
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 4.2e-11 71.6 113 39.8
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 4.2e-11 71.6 90 48.9
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.6e-10 69.7 105 44.8
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.6e-10 69.7 107 44.9
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 7.9e-10 67.4 115 40.9
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 1.4e-09 66.6 108 45.4
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 5.1e-09 64.7 61 55.7
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.1e-08 63.5 97 41.2
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 4.3e-08 61.6 107 39.3
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 5.7e-08 61.2 104 39.4
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 5.7e-08 61.2 104 39.4
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.7e-08 60.5 41 61.0
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.7e-07 59.7 96 40.6
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.7e-07 59.7 115 40.9
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.8e-07 58.9 106 39.6
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.7e-07 58.5 53 54.7
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 4.8e-07 58.2 47 57.4
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 8.2e-07 57.4 118 38.1
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 8.2e-07 57.4 119 36.1
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.2e-07 57.4 57 49.1
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 1.8e-06 56.2 116 37.9
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.8e-06 56.2 42 59.5
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 3.1e-06 55.5 79 38.0
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 4.1e-06 55.1 119 35.3
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 5.3e-06 54.7 97 42.3
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 5.3e-06 54.7 40 55.0
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 9.1e-06 53.9 51 51.0


User provided reference genes

Program Settings