Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.9e-244 848.2 446 100.0
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 2.2e-199 699.1 491 74.9
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.7e-183 645.2 479 72.7
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.5e-179 633.3 493 69.2
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 4.4e-176 621.7 495 67.3
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 3.8e-172 608.6 492 66.9
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.0e-169 600.5 462 70.8
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.8e-167 592.4 493 66.1
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.4e-166 589.3 494 65.2
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.3e-164 582.8 493 64.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.7e-162 575.1 488 64.8
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.4e-160 568.5 488 63.9
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.0e-157 559.7 488 63.3
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.3e-155 552.0 503 62.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 4.6e-141 505.4 514 54.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 4.7e-138 495.4 500 57.2
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 4.4e-136 488.8 503 55.7
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.3e-135 487.3 495 54.7
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 8.3e-135 484.6 503 54.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.4e-134 483.8 503 54.5
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.9e-134 483.4 503 54.5
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.2e-134 482.6 489 55.6
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 4.1e-134 482.3 495 56.6
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 9.2e-134 481.1 496 55.4
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 9.2e-134 481.1 496 55.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.2e-133 480.7 505 54.1
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.6e-133 480.3 493 56.4
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.5e-133 479.2 512 53.9
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.5e-131 473.0 497 54.5
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 7.3e-131 471.5 495 54.7
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 7.3e-131 471.5 506 53.8
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.1e-130 469.9 439 59.2
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.6e-130 469.2 495 53.7
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 4.7e-130 468.8 496 54.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 6.2e-130 468.4 500 52.8
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.2e-128 464.2 498 52.8
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 5.8e-128 461.8 502 53.0
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.7e-127 460.3 492 54.1
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 4.9e-127 458.8 496 52.2
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.4e-126 457.2 588 46.8
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 5.4e-126 455.3 480 52.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.2e-125 454.1 470 55.3
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.5e-125 452.6 493 51.9
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.7e-124 450.3 496 53.2
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.3e-122 444.1 493 51.5
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 2.1e-122 443.4 335 65.4
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 2.1e-122 443.4 495 50.3
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 8.1e-122 441.4 493 50.3
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.4e-121 439.9 494 53.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 5.3e-121 438.7 499 52.3
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.2e-120 437.6 497 50.9
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.0e-120 436.8 497 50.9
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.7e-119 433.7 497 50.1
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.1e-118 431.0 488 50.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.4e-118 430.6 499 51.1
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 7.1e-118 428.3 498 52.6
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 7.1e-118 428.3 500 49.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 9.3e-118 427.9 494 52.2
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 4.6e-117 425.6 402 57.0
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.6e-117 425.6 489 52.8
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 6.0e-117 425.2 495 50.9
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 6.0e-117 425.2 495 50.9
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 7.8e-117 424.9 499 51.5
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 7.8e-117 424.9 498 49.2
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 7.8e-117 424.9 489 51.1
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.0e-116 424.5 439 53.5
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.7e-116 423.7 439 54.9
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.9e-116 422.5 504 49.8
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 5.1e-116 422.2 427 53.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 5.1e-116 422.2 448 50.9
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 5.1e-116 422.2 430 54.9
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.5e-115 420.6 470 51.3
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 4.3e-115 419.1 497 49.5
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 5.6e-115 418.7 494 49.4
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 9.6e-115 417.9 447 53.7
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 2.1e-114 416.8 460 52.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.8e-114 416.4 492 49.0
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.8e-113 413.7 490 48.4
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.1e-113 412.9 437 52.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 3.1e-113 412.9 497 50.9
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 3.1e-113 412.9 425 52.9
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 5.3e-113 412.1 499 51.1
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 6.9e-113 411.8 488 48.8
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 9.0e-113 411.4 435 53.3
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 3.4e-112 409.5 474 49.2
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.2e-111 406.8 423 52.0
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.8e-111 406.0 419 53.9
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.4e-110 403.3 484 49.4
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 4.2e-110 402.5 446 50.7
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 4.2e-110 402.5 487 48.5
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 4.2e-110 402.5 432 51.6
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 2.1e-109 400.2 424 51.9
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 3.5e-109 399.4 463 49.0
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 7.9e-109 398.3 432 51.4
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.8e-108 397.1 445 51.7
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 6.7e-108 395.2 454 50.2
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 6.7e-108 395.2 474 49.4
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.5e-107 394.0 468 48.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.3e-107 392.5 460 50.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.8e-106 389.8 435 50.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 9.0e-105 384.8 432 52.1
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.2e-104 384.4 435 50.1
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 3.4e-104 382.9 438 48.9
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.0e-103 381.3 432 52.3
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.8e-103 379.4 433 49.4
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.6e-101 374.0 482 49.2
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.6e-101 374.0 447 49.4
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.3e-98 364.4 458 46.9
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.4e-97 360.1 516 44.4
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.5e-96 357.5 314 58.0
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 6.5e-95 352.1 437 45.8
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.4e-94 350.9 414 50.5
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.2e-93 347.8 511 44.0
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.7e-93 346.7 311 57.6
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-89 334.3 363 51.8
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 5.9e-88 328.9 481 42.6
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 7.7e-88 328.6 451 46.6
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 7.2e-86 322.0 287 59.6
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 7.2e-86 322.0 428 45.8
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.8e-82 309.3 385 49.6
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.0e-80 303.9 394 46.2
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-79 300.4 215 68.4
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 9.1e-73 278.5 240 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.0e-71 275.0 306 49.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.5e-70 271.2 185 69.2
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.9e-70 270.8 382 45.8
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 8.0e-69 265.4 446 39.0
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 8.0e-69 265.4 404 40.8
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.5e-67 261.2 338 46.2
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.7e-66 257.7 421 41.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 9.1e-65 251.9 221 57.9
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 3.4e-59 233.4 289 45.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.7e-58 231.1 362 43.9
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 8.0e-53 212.2 107 94.4
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-50 203.8 193 56.0
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.6e-48 198.0 483 30.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.1e-33 148.7 122 62.3
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 9.2e-33 145.6 293 32.4
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.5e-30 137.5 231 41.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 3.6e-29 133.7 269 32.3
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.3e-28 131.0 309 35.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 2.4e-25 120.9 83 68.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.2e-25 120.6 82 64.6
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.9e-23 113.6 83 61.4
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.2e-17 94.0 67 67.2
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.6e-16 90.1 63 68.3
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.3e-15 87.8 63 66.7
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.1e-13 81.3 141 39.7
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 3.4e-11 73.9 57 63.2
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 2.2e-10 71.2 46 69.6
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.9e-10 70.9 169 29.0
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.1e-06 58.9 66 50.0


User provided reference genes

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