Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 7.7e-160 567.0 267 100.0
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 4.4e-139 498.0 267 87.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 1.4e-132 476.5 268 86.2
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.2e-131 473.4 273 83.5
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 2.0e-120 436.0 270 77.0
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.1e-118 430.3 279 74.2
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 1.9e-118 429.5 279 74.6
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 1.9e-118 429.5 255 78.8
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.2e-117 426.8 281 73.7
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 2.2e-114 416.0 263 74.5
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 1.2e-109 400.2 277 70.8
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 4.4e-107 391.7 280 69.6
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 5.8e-99 364.8 262 66.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 1.9e-97 359.8 268 62.7
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.9e-94 349.7 263 62.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 5.6e-94 348.2 258 64.7
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.8e-92 343.2 263 62.0
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 2.9e-90 335.9 264 60.6
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.9e-90 335.9 257 63.0
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 2.4e-89 332.8 264 58.3
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 1.6e-88 330.1 248 62.9
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.6e-88 330.1 254 61.4
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.7e-88 329.3 248 63.3
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.6e-88 328.6 248 62.9
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-87 326.6 248 62.5
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 5.1e-87 325.1 263 60.5
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 6.6e-87 324.7 267 58.8
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 1.9e-86 323.2 269 58.4
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 3.3e-86 322.4 251 60.6
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.3e-86 322.4 248 61.7
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 9.6e-86 320.9 251 59.8
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.6e-85 320.1 261 58.6
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 3.6e-85 318.9 251 61.0
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 8.1e-85 317.8 262 57.6
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.1e-84 317.4 256 58.6
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 2.4e-84 316.2 261 59.8
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 3.1e-84 315.8 269 55.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 3.1e-84 315.8 267 55.1
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 4.0e-84 315.5 269 58.0
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 6.8e-84 314.7 254 58.7
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 4.4e-83 312.0 251 57.4
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 4.9e-82 308.5 238 63.0
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.4e-81 307.0 264 54.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.2e-80 303.9 264 54.5
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.2e-80 303.9 268 55.6
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 1.2e-80 303.9 286 52.1
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 1.6e-80 303.5 269 54.3
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.6e-80 303.5 261 56.3
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 2.7e-80 302.8 255 57.6
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 2.7e-80 302.8 254 55.9
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 3.5e-80 302.4 259 55.6
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 1.3e-79 300.4 253 58.1
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.7e-79 300.1 256 55.1
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 3.9e-79 298.9 259 56.0
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 8.7e-79 297.7 240 60.0
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.9e-78 296.6 263 53.6
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 5.6e-78 295.0 264 56.1
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 2.8e-77 292.7 264 54.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 8.1e-77 291.2 264 54.9
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 1.4e-76 290.4 255 54.5
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 2.4e-76 289.7 264 54.5
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 3.1e-76 289.3 262 51.1
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 4.0e-76 288.9 265 54.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.0e-76 288.9 268 53.7
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.2e-75 287.3 275 52.7
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 2.0e-75 286.6 265 54.3
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 2.0e-75 286.6 260 51.9
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 2.0e-75 286.6 269 50.9
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 9.9e-75 284.3 242 58.3
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.7e-74 283.5 258 53.9
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.7e-74 283.5 238 58.0
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 2.2e-74 283.1 265 54.3
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.9e-73 280.0 247 55.1
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 4.6e-72 275.4 257 52.9
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 4.6e-72 275.4 243 57.2
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 6.0e-72 275.0 242 56.6
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 7.9e-72 274.6 265 51.3
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 5.1e-71 271.9 264 51.1
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 8.7e-71 271.2 243 53.9
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 7.3e-70 268.1 242 56.2
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 1.3e-69 267.3 254 51.6
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 1.3e-69 267.3 263 51.0
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 1.3e-69 267.3 261 50.6
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 4.8e-69 265.4 256 48.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.8e-69 265.4 243 54.3
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 8.1e-69 264.6 273 48.7
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 1.8e-68 263.5 265 51.3
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 5.8e-67 258.5 237 55.3
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.3e-66 257.3 259 49.4
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 3.8e-66 255.8 257 47.5
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.9e-65 253.4 270 49.6
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.6e-64 250.4 262 47.7
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.9e-62 243.4 228 53.1
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 2.1e-61 240.0 258 47.3
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 7.1e-57 224.9 259 45.9
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 2.1e-56 223.4 196 51.5
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.9e-54 216.9 173 54.9
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 2.1e-53 213.4 252 42.9
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 4.5e-51 205.7 151 60.9
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.3e-50 204.1 211 49.8
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 2.2e-50 203.4 212 50.5
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 4.6e-48 195.7 171 56.1
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.4e-44 184.1 256 39.1
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.9e-41 173.7 252 40.1
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 5.5e-41 172.2 136 61.8
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 1.0e-39 167.9 242 42.1
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-37 161.0 243 41.2
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 9.1e-36 154.8 169 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.4e-33 147.5 224 35.3
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.4e-31 141.0 221 37.1
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.1e-30 137.9 182 42.9
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.7e-29 134.0 99 63.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 2.8e-29 133.3 198 35.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 8.2e-29 131.7 115 59.1
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 4.5e-27 125.9 131 52.7
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 2.5e-25 120.2 81 65.4
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 3.2e-25 119.8 228 32.5
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 1.2e-24 117.9 238 34.5
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.4e-23 114.4 95 57.9
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 6.3e-21 105.5 106 53.8
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 1.1e-20 104.8 104 51.9
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 3.0e-15 86.7 53 69.8
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 2.0e-14 84.0 91 47.3
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 3.8e-10 69.7 70 52.9
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 6.5e-10 68.9 121 32.2
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 6.8e-07 58.9 89 39.3
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 3.4e-06 56.6 92 35.9
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 5.7e-06 55.8 301 21.3


User provided reference genes

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