Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 0.0e+00 2040.8 1113 100.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 0.0e+00 1278.1 998 70.7
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 0.0e+00 1172.9 997 66.3
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 0.0e+00 1133.6 971 66.4
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 7.3e-281 971.1 1004 57.1
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 3.0e-266 922.5 1003 55.6
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 6.2e-264 914.8 1000 55.0
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 5.1e-250 868.6 999 53.6
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 3.1e-239 832.8 1006 51.8
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.2e-230 804.3 989 51.6
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.2e-227 794.3 769 58.9
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 6.5e-144 516.2 1031 36.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.3e-136 491.9 1040 36.2
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 3.6e-134 483.8 1041 36.1
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 4.8e-107 393.7 1006 33.6
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 5.9e-105 386.7 1067 31.2
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.5e-103 382.1 1049 33.0
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.9e-103 381.7 1047 33.2
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 4.2e-103 380.6 1022 32.6
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 9.4e-103 379.4 1033 32.5
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.7e-102 377.9 1068 31.8
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-102 377.5 1046 32.9
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 8.0e-102 376.3 1045 32.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 8.0e-102 376.3 1041 32.5
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 8.8e-101 372.9 773 36.4
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 3.7e-99 367.5 1038 32.8
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 6.3e-99 366.7 1004 31.8
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 6.3e-99 366.7 1015 33.1
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 4.1e-98 364.0 1071 32.1
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 9.1e-98 362.8 1049 31.9
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 2.7e-97 361.3 1013 33.0
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 2.3e-96 358.2 1043 32.0
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-95 354.4 1006 33.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.3e-95 354.4 1014 32.5
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 3.3e-95 354.4 1041 31.8
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 3.3e-95 354.4 614 38.1
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.2e-94 352.4 1004 32.6
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.1e-94 351.7 1079 31.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 3.6e-94 350.9 1046 32.0
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 3.6e-94 350.9 1004 31.6
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.1e-94 350.1 1035 32.1
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.0e-93 349.4 1036 32.4
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 4.4e-92 344.0 1065 31.4
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 7.5e-92 343.2 624 37.8
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.7e-91 342.0 750 33.9
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 2.8e-91 341.3 1051 31.2
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.3e-91 340.1 1028 31.0
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 2.0e-89 335.1 987 30.9
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 1.7e-88 332.0 1002 31.8
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.1e-87 329.3 594 36.9
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.3e-87 326.6 1062 29.8
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 9.5e-87 326.2 450 44.7
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 6.1e-86 323.6 854 31.6
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 6.4e-83 313.5 741 33.9
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 2.7e-81 308.1 177 84.2
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 1.6e-78 298.9 580 35.3
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 6.4e-75 287.0 973 28.3
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.9e-74 285.4 721 33.8
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 1.2e-73 282.7 1006 28.0
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.1e-73 282.0 626 33.7
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.1e-73 282.0 1132 28.3
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 7.8e-73 280.0 606 32.8
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 3.0e-72 278.1 727 31.9
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.1e-71 276.2 1093 28.5
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 1.5e-71 275.8 1103 28.0
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 2.5e-71 275.0 610 33.9
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 2.5e-71 275.0 1134 28.5
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 4.3e-71 274.2 844 29.7
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 9.5e-71 273.1 1002 30.4
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 1.6e-70 272.3 1008 28.8
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 2.1e-70 271.9 1083 27.7
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 8.1e-70 270.0 537 35.6
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 2.3e-69 268.5 926 29.5
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 4.0e-69 267.7 1033 28.4
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.4e-68 264.6 580 33.3
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 5.8e-68 263.8 974 28.7
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 7.5e-68 263.5 1018 28.4
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 3.7e-67 261.2 815 29.9
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.4e-66 259.2 550 34.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.2e-66 258.1 1030 28.2
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 4.1e-66 257.7 894 29.6
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.6e-65 255.8 431 37.1
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 7.8e-65 253.4 762 30.4
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 7.8e-65 253.4 868 28.2
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 1.3e-64 252.7 434 37.6
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.3e-64 252.7 548 32.8
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.7e-64 252.3 978 28.7
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 3.0e-64 251.5 1089 27.5
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 6.6e-64 250.4 640 31.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 1.5e-63 249.2 855 28.0
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 4.7e-62 244.2 983 28.1
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 4.7e-62 244.2 913 27.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 6.8e-61 240.4 825 28.6
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 8.9e-61 240.0 872 28.0
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 8.9e-61 240.0 878 27.6
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.2e-60 239.6 809 31.9
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 3.2e-58 231.5 587 31.9
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 5.1e-56 224.2 1054 26.4
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 1.6e-54 219.2 375 36.8
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 4.6e-49 201.1 360 34.7
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 6.0e-49 200.7 174 52.3
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 3.2e-42 178.3 320 34.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.8e-37 162.5 517 28.4
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 7.6e-36 157.1 377 30.5
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 1.7e-35 156.0 376 30.6
Psat3g054600 Pisum sativum HOM05D006048 ORTHO05D007642 1.4e-34 152.9 149 59.1
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 1.2e-28 133.3 188 42.6
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 5.8e-28 131.0 233 37.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.5e-23 116.3 316 25.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 1.9e-23 115.9 757 25.4
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.3e-23 115.2 319 31.7
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.0e-19 103.6 356 31.5
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 5.0e-19 101.3 356 31.2
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 5.5e-18 97.8 586 24.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 4.8e-14 84.7 85 48.2
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 1.0e-11 77.0 276 26.8
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.2e-10 72.0 107 43.9
Psat4g159320 Pisum sativum HOM05D000515 ORTHO05D001911 4.2e-10 71.6 63 68.3
Psat5g154640 Pisum sativum HOM05D000515 ORTHO05D020117 1.2e-09 70.1 42 83.3
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 3.0e-08 65.5 128 39.8


User provided reference genes

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