Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.7e-169 598.6 300 100.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.6e-126 456.4 323 74.9
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.3e-120 436.8 323 73.1
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.3e-119 432.2 323 72.4
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.3e-115 420.2 313 71.6
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 4.2e-114 415.2 323 69.7
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 5.7e-111 404.8 313 69.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.0e-96 355.9 313 62.0
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 3.9e-96 355.5 319 59.2
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.5e-95 353.6 316 58.2
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.3e-94 350.5 312 60.9
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.7e-94 350.1 314 60.5
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 2.2e-94 349.7 316 60.1
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 4.8e-94 348.6 286 66.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 4.1e-93 345.5 313 59.1
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 2.0e-92 343.2 312 58.0
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 2.0e-92 343.2 309 59.9
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.0e-92 343.2 315 59.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.0e-91 340.9 315 58.1
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 2.2e-91 339.7 313 60.1
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.8e-91 339.0 311 56.9
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 6.5e-91 338.2 309 59.2
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 8.5e-91 337.8 310 60.3
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 1.1e-90 337.4 315 58.1
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.9e-90 336.7 309 59.2
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.2e-90 335.5 309 59.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 7.2e-90 334.7 312 56.7
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.6e-89 333.6 313 57.5
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.6e-89 333.6 308 57.8
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.6e-89 332.4 309 58.9
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 4.7e-89 332.0 317 55.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 6.1e-89 331.6 312 56.7
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 7.9e-89 331.3 309 58.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 7.9e-89 331.3 309 58.6
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.9e-89 331.3 315 56.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.0e-88 330.9 313 57.8
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.0e-88 330.9 312 57.1
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.0e-88 330.9 305 58.7
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 3.0e-88 329.3 314 57.0
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.7e-88 328.2 315 56.2
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 6.7e-88 328.2 314 54.8
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 8.8e-88 327.8 314 54.8
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.1e-87 327.4 277 62.8
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.5e-87 327.0 309 58.3
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 7.4e-87 324.7 306 57.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.7e-86 323.6 309 55.7
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.7e-86 323.6 311 57.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.7e-86 322.4 320 54.1
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.8e-86 322.0 299 57.9
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.8e-85 320.1 318 55.0
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.8e-85 320.1 315 56.8
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 3.1e-85 319.3 322 54.0
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 3.1e-85 319.3 314 57.3
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 5.3e-85 318.5 353 52.4
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 9.1e-85 317.8 315 53.7
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 9.1e-85 317.8 319 53.9
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.2e-84 317.4 315 53.3
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.2e-84 317.4 303 57.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 2.0e-84 316.6 314 55.1
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.6e-84 316.2 312 54.5
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.5e-84 315.8 313 54.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 4.5e-84 315.5 312 56.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.0e-83 314.3 317 54.6
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 1.7e-83 313.5 315 54.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 2.9e-83 312.8 324 52.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 6.5e-83 311.6 312 54.5
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.5e-82 309.7 311 55.6
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.5e-82 309.7 313 53.7
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.6e-81 305.8 323 51.7
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 6.1e-81 305.1 316 53.5
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 6.1e-81 305.1 328 51.8
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.4e-80 303.9 322 53.1
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 8.8e-80 301.2 299 55.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.3e-79 299.3 315 50.8
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 5.7e-79 298.5 315 54.9
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 7.5e-79 298.1 311 52.4
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 9.7e-79 297.7 323 50.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.0e-76 290.0 316 50.3
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 3.5e-76 289.3 315 52.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-75 286.6 308 53.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-75 286.6 310 53.9
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.8e-75 285.8 312 51.0
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.8e-75 285.8 308 53.6
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.5e-75 284.6 305 54.1
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.5e-75 284.6 305 54.1
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-74 283.9 305 54.1
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.5e-74 283.1 308 53.2
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.2e-74 282.3 305 53.8
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 4.2e-74 282.3 307 50.2
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.4e-74 281.2 307 53.1
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.4e-74 281.2 307 53.1
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 4.0e-72 275.8 314 48.7
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 2.0e-71 273.5 314 48.7
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.4e-71 272.7 315 49.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 4.4e-71 272.3 299 53.5
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 5.7e-71 271.9 313 48.9
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.3e-70 270.8 313 47.6
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 8.3e-70 268.1 266 54.9
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.4e-69 266.5 314 48.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.1e-69 266.2 308 49.4
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.0e-69 265.0 304 51.6
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 9.1e-69 264.6 312 46.5
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.5e-68 262.7 313 47.9
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 5.9e-68 261.9 312 46.5
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.0e-67 258.8 313 47.6
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-66 256.9 309 46.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.6e-65 252.7 316 44.9
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 8.0e-65 251.5 310 46.8
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 2.3e-64 250.0 313 45.0
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.0e-64 249.2 316 45.3
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.4e-63 246.1 357 40.6
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 7.5e-63 245.0 168 81.0
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.8e-63 244.6 213 57.7
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.3e-62 244.2 316 43.7
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.1e-61 239.6 236 53.8
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.1e-61 239.2 240 52.9
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.2e-60 237.7 309 43.0
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.2e-60 237.7 309 43.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.0e-60 236.9 310 42.9
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.0e-60 236.9 310 42.9
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 4.5e-60 235.7 321 44.9
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 7.7e-60 235.0 308 43.5
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.0e-59 234.6 311 42.4
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 3.8e-59 232.6 306 43.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.5e-58 229.9 308 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 9.5e-58 228.0 317 43.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-52 209.9 211 53.6
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 4.6e-52 209.1 315 41.9
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 2.3e-51 206.8 322 39.1
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 9.8e-47 191.4 196 50.0
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 3.7e-46 189.5 187 53.5
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.2e-45 186.4 257 44.0
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.4e-37 161.0 162 57.4
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 5.4e-37 159.1 94 71.3
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 6.8e-32 142.1 96 63.5
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 7.1e-29 132.1 91 80.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.2e-28 131.3 100 58.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 1.0e-27 128.3 223 36.8
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.3e-27 127.1 197 44.2
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.5e-26 123.6 345 29.9
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 4.4e-23 112.8 153 45.1
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.1e-20 104.0 83 57.8
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 8.1e-17 92.0 101 52.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.5e-15 87.8 91 56.0
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.1e-10 71.6 50 56.0
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 4.0e-08 63.2 321 21.2
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.0e-08 62.0 53 56.6
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 3.4e-07 60.1 59 45.8
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.6e-07 58.9 46 56.5


User provided reference genes

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