Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 6.1e-209 730.7 405 100.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 2.7e-193 678.7 434 80.6
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 7.0e-189 664.1 434 77.6
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.1e-186 656.8 434 77.0
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 2.8e-177 625.5 433 72.5
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 2.3e-176 622.5 434 72.1
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 6.3e-174 614.4 434 71.4
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.5e-172 608.6 435 71.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 9.8e-167 590.5 434 69.8
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 9.5e-162 573.9 421 70.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 7.0e-157 557.8 436 64.4
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.5e-154 550.1 437 64.8
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.5e-154 549.3 437 64.8
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 4.3e-154 548.5 439 63.1
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 5.6e-154 548.1 434 64.1
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.1e-153 546.2 430 62.8
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 2.3e-152 542.7 437 63.4
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 6.8e-152 541.2 439 62.6
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-151 539.3 439 62.6
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-151 539.3 439 62.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.6e-151 539.3 439 62.9
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.1e-149 533.9 437 63.4
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.4e-149 532.7 438 61.9
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.5e-148 528.9 426 61.7
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.5e-148 528.9 446 60.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.3e-147 526.2 430 63.3
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 8.6e-147 524.2 422 63.5
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.1e-146 523.9 422 63.5
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 2.5e-146 522.7 428 61.9
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.3e-146 522.3 421 63.9
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 7.3e-146 521.2 436 61.5
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 7.3e-146 521.2 422 63.3
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 7.3e-146 521.2 415 64.1
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 7.3e-146 521.2 432 60.2
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 7.3e-146 521.2 432 60.4
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 1.6e-145 520.0 469 58.4
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.6e-145 520.0 431 59.9
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.6e-145 520.0 438 60.7
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.1e-145 519.6 438 60.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 2.8e-145 519.2 437 60.4
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 2.8e-145 519.2 436 60.3
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 3.6e-145 518.8 438 60.3
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 3.6e-145 518.8 446 59.9
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.6e-145 518.8 436 60.3
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 8.1e-145 517.7 417 61.4
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 8.1e-145 517.7 435 60.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.4e-144 516.2 439 59.0
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.1e-144 515.8 422 62.6
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 5.2e-144 515.0 425 61.9
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 6.8e-144 514.6 436 60.1
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.5e-143 513.5 435 59.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 2.0e-143 513.1 426 62.0
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 2.0e-143 513.1 428 61.4
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 2.0e-143 513.1 426 61.5
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 2.6e-143 512.7 437 60.2
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.6e-143 512.7 439 59.2
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 2.6e-143 512.7 439 61.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 3.4e-143 512.3 438 60.7
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 4.4e-143 511.9 437 60.2
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 5.8e-143 511.5 436 60.1
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 9.9e-143 510.8 424 61.8
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.7e-142 510.0 433 60.5
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 2.2e-142 509.6 424 61.8
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 2.9e-142 509.2 423 62.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 2.9e-142 509.2 476 56.9
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-141 507.3 424 61.6
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-141 506.5 425 60.0
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-141 506.5 435 59.1
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.9e-141 506.5 438 60.0
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 2.4e-141 506.1 422 60.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 3.2e-141 505.8 405 64.2
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 9.2e-141 504.2 450 58.4
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.6e-140 503.4 440 59.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.7e-139 500.0 433 60.5
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 3.9e-139 498.8 438 59.6
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.3e-138 495.4 434 60.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 8.1e-137 491.1 435 58.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.8e-136 490.0 501 52.9
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 5.2e-136 488.4 481 55.1
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 4.4e-135 485.3 394 61.4
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.7e-134 483.4 438 57.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 5.8e-127 458.4 423 58.4
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 2.2e-126 456.4 406 58.1
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 6.4e-126 454.9 451 53.7
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.1e-125 451.4 379 58.8
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.7e-124 449.5 435 55.2
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.5e-122 443.0 405 58.0
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 9.6e-122 441.0 417 57.1
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.5e-119 433.7 390 56.7
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.6e-113 413.7 332 64.2
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.1e-113 413.3 330 64.5
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 1.4e-112 410.6 417 50.6
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.0e-111 406.8 405 54.3
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.7e-110 403.7 420 52.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 2.9e-110 402.9 426 52.6
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.9e-109 400.2 369 55.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 9.3e-109 397.9 334 62.9
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 1.6e-108 397.1 339 61.4
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.3e-107 393.3 420 50.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 3.0e-107 392.9 409 52.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 6.7e-107 391.7 399 52.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.9e-106 390.2 358 56.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.6e-105 387.1 339 60.5
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.8e-105 386.3 368 53.8
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.4e-104 384.0 397 50.9
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.5e-101 373.2 385 50.9
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 2.1e-100 370.2 344 57.8
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.9e-93 347.1 326 54.0
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.6e-92 344.0 300 60.3
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.0e-91 341.3 390 51.3
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.2e-87 327.8 312 55.4
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 7.2e-85 318.5 406 45.3
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 3.9e-83 312.8 580 34.3
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 3.9e-83 312.8 405 44.2
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.4e-80 303.5 199 72.9
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 8.0e-76 288.5 200 70.0
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.0e-75 288.1 151 92.7
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.8e-75 287.3 185 74.6
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.1e-69 268.1 376 44.4
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.6e-68 264.2 181 71.8
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.8e-67 260.8 372 43.0
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.0e-67 259.6 331 44.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 5.2e-67 259.2 193 66.3
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 6.8e-67 258.8 165 73.9
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.5e-66 257.7 336 46.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 5.4e-64 249.2 149 77.2
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 5.9e-63 245.7 400 39.5
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.9e-62 243.4 152 75.7
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.5e-61 241.1 270 47.4
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 4.0e-59 233.0 149 74.5
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.8e-56 224.2 470 36.4
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-53 214.9 143 70.6
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 2.3e-51 207.2 199 54.3
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 3.1e-51 206.8 139 69.8
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.2e-50 204.9 148 68.9
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 1.1e-48 198.4 130 71.5
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 7.3e-45 185.7 400 33.8
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 2.8e-44 183.7 407 32.4
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 1.4e-43 181.4 117 72.6
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.4e-43 181.4 111 78.4
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 2.1e-39 167.5 186 53.8
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 6.8e-35 152.5 97 77.3
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 6.6e-30 136.0 406 27.3
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-29 134.0 92 69.6
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.5e-29 134.0 92 69.6
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 7.3e-29 132.5 129 58.1
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.2e-25 120.9 100 62.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.2e-20 102.8 60 76.7
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 7.1e-16 89.4 298 28.9
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.9e-13 81.3 44 75.0
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-11 74.7 47 76.6
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 9.9e-10 68.9 50 66.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 6.4e-09 66.2 53 58.5
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-08 65.1 52 57.7
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-08 64.7 52 55.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 2.4e-08 64.3 52 55.8


User provided reference genes

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