Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6 Trifolium pratense HOM05D003842 ORTHO05D004436 4.9e-24 113.6 57 100.0
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 2.2e-16 88.2 45 93.3
Psat3g040280 Pisum sativum HOM05D003842 ORTHO05D004436 3.2e-15 84.3 42 97.6
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 7.2e-15 83.2 42 95.2
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 7.2e-15 83.2 42 95.2
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 1.6e-14 82.0 42 92.9
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.6e-14 80.9 42 92.9
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.6e-14 80.9 42 92.9
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 1.4e-13 79.0 42 88.1
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 2.3e-13 78.2 41 90.2
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 6.7e-13 76.6 41 85.4
Gohir.A09G144350 Gossypium hirsutum HOM05D003842 ORTHO05D004436 1.5e-12 75.5 41 87.8
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 1.5e-12 75.5 41 87.8
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 3.3e-12 74.3 41 82.9
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 4.3e-12 73.9 41 82.9
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 4.3e-12 73.9 41 85.4
Gohir.D11G342350 Gossypium hirsutum HOM05D003842 ORTHO05D004436 4.3e-12 73.9 41 85.4
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 4.3e-12 73.9 41 85.4
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 7.4e-12 73.2 42 81.0
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 7.4e-12 73.2 41 82.9
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 9.7e-12 72.8 41 82.9
Ciclev10024523m.g Citrus clementina HOM05D003842 ORTHO05D004436 1.3e-11 72.4 41 80.5
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 1.7e-11 72.0 41 82.9
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 1.7e-11 72.0 41 82.9
HPP92_022597 Vanilla planifolia HOM05D003842 ORTHO05D004436 1.7e-11 72.0 41 80.5
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 2.2e-11 71.6 41 80.5
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 2.8e-11 71.2 41 80.5
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 2.8e-11 71.2 41 80.5
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 2.8e-11 71.2 41 80.5
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 2.8e-11 71.2 41 80.5
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 3.7e-11 70.9 41 78.0
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 3.7e-11 70.9 41 78.0
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 4.8e-11 70.5 53 64.2
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 4.8e-11 70.5 41 78.0
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 4.8e-11 70.5 41 75.6
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 4.8e-11 70.5 41 75.6
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 6.3e-11 70.1 41 75.6
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 6.3e-11 70.1 41 75.6
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 6.3e-11 70.1 40 77.5
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 6.3e-11 70.1 41 75.6
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 8.2e-11 69.7 41 75.6
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 8.2e-11 69.7 41 78.0
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 1.1e-10 69.3 41 75.6
Hma1.2p1_0547F.1_g176420 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 1.4e-10 68.9 41 75.6
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 1.4e-10 68.9 41 73.2
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 1.8e-10 68.6 40 75.0
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 1.8e-10 68.6 41 75.6
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 1.8e-10 68.6 41 75.6
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 1.8e-10 68.6 41 75.6
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 1.8e-10 68.6 41 75.6
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 1.8e-10 68.6 40 77.5
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 2.4e-10 68.2 41 73.2
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 2.4e-10 68.2 41 75.6
vmacro07325 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 2.4e-10 68.2 41 75.6
Atru.chr8.1723 Acer truncatum HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 75.6
Atru.chr8.1733 Acer truncatum HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 75.6
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 73.2
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 73.2
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 73.2
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 75.6
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 3.1e-10 67.8 41 75.6
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 4.1e-10 67.4 41 73.2
MD12G1105200 Malus domestica HOM05D003842 ORTHO05D004436 4.1e-10 67.4 41 73.2
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 5.3e-10 67.0 40 77.5
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 5.3e-10 67.0 40 75.0
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 5.3e-10 67.0 41 75.6
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 6.9e-10 66.6 41 73.2
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.9e-10 66.6 41 73.2
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.9e-10 66.6 41 73.2
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.9e-10 66.6 41 73.2
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.9e-10 66.6 41 73.2
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 9.1e-10 66.2 40 72.5
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 9.1e-10 66.2 40 72.5
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 9.1e-10 66.2 40 72.5
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 9.1e-10 66.2 40 72.5
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 9.1e-10 66.2 40 72.5
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 1.5e-09 65.5 40 70.0
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 1.5e-09 65.5 39 74.4
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 1.5e-09 65.5 41 70.7
FAN14G4083 Fragaria x ananassa HOM05D003842 ORTHO05D004436 1.5e-09 65.5 41 70.7
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 2.0e-09 65.1 40 70.0
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 2.0e-09 65.1 40 70.0
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 2.0e-09 65.1 41 75.6
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 2.6e-09 64.7 40 70.0
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 3.4e-09 64.3 41 73.2
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 4.5e-09 63.9 41 68.3
Hund20322 Selenicereus undatus HOM05D003842 ORTHO05D004436 4.5e-09 63.9 40 72.5
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 5.9e-09 63.5 40 70.0
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 1.3e-08 62.4 41 73.2
Actinidia26647 Actinidia chinensis HOM05D003842 ORTHO05D004436 2.2e-08 61.6 41 68.3
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 3.8e-08 60.8 41 65.9
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 1.1e-07 59.3 41 65.9
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 2.1e-06 55.1 36 63.9


User provided reference genes

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