Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 2.2e-158 562.4 313 100.0
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 4.5e-119 431.8 267 85.4
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 7.4e-114 414.5 262 80.9
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 2.4e-112 409.5 254 83.9
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 5.3e-112 408.3 241 84.6
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 5.3e-112 408.3 277 76.2
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 2.0e-111 406.4 234 89.7
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 4.5e-111 405.2 249 83.5
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 7.7e-111 404.4 257 81.7
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.2e-110 402.9 257 81.7
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 2.9e-110 402.5 250 82.8
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 5.0e-110 401.7 253 82.2
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 5.0e-110 401.7 253 82.2
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 1.1e-109 400.6 262 79.4
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 1.5e-109 400.2 253 81.8
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 2.5e-109 399.4 259 79.9
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 2.5e-109 399.4 252 80.2
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 3.2e-109 399.1 260 78.1
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 3.2e-109 399.1 257 80.5
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 4.2e-109 398.7 257 79.4
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 5.5e-109 398.3 250 82.0
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 2.1e-108 396.4 233 85.8
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 4.7e-108 395.2 236 83.1
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 4.7e-108 395.2 243 84.0
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 6.1e-108 394.8 268 78.7
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 1.0e-107 394.0 251 81.7
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 1.8e-107 393.3 241 82.2
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.3e-107 392.9 239 82.4
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 2.3e-107 392.9 256 81.2
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 3.0e-107 392.5 232 84.5
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 3.0e-107 392.5 252 79.4
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 4.0e-107 392.1 252 79.4
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 6.7e-107 391.3 252 79.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 8.8e-107 391.0 232 83.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 8.8e-107 391.0 264 77.3
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 1.2e-106 390.6 250 79.6
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 7.5e-106 387.9 246 80.5
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 9.7e-106 387.5 243 80.7
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 9.7e-106 387.5 266 76.3
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 1.3e-105 387.1 255 76.9
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.7e-105 386.7 243 81.5
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 1.7e-105 386.7 238 83.6
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 2.2e-105 386.3 255 78.0
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 2.8e-105 386.0 248 79.8
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 4.8e-105 385.2 249 81.1
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 6.3e-105 384.8 237 80.6
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 1.4e-104 383.6 237 81.9
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 1.8e-104 383.3 239 82.4
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 3.1e-104 382.5 244 80.7
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 4.1e-104 382.1 255 77.3
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 4.1e-104 382.1 233 82.4
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 5.3e-104 381.7 235 81.7
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 1.6e-103 380.2 248 79.0
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 2.7e-103 379.4 242 78.9
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 5.9e-103 378.3 232 81.9
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 5.9e-103 378.3 252 74.6
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.2e-102 376.3 263 75.7
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 5.0e-102 375.2 259 74.1
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 5.0e-102 375.2 229 83.0
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.5e-101 373.6 251 76.5
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 1.9e-101 373.2 251 78.1
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 2.5e-101 372.9 243 79.8
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 9.4e-101 370.9 225 83.1
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 2.1e-100 369.8 261 73.2
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 8.0e-100 367.9 231 82.3
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 1.4e-99 367.1 261 72.0
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.4e-99 367.1 262 74.8
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.3e-99 366.3 250 74.8
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 6.8e-99 364.8 246 74.4
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 1.5e-98 363.6 246 74.4
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 3.4e-98 362.5 258 71.7
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 4.4e-98 362.1 258 71.3
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 7.5e-98 361.3 258 71.3
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 9.8e-98 360.9 265 70.6
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 9.8e-98 360.9 255 71.0
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 9.8e-98 360.9 232 76.7
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 9.8e-98 360.9 242 75.2
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 1.3e-97 360.5 232 77.6
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 1.7e-97 360.1 239 75.7
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 2.2e-97 359.8 246 74.0
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 2.2e-97 359.8 258 71.3
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 2.8e-97 359.4 237 75.5
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 3.7e-97 359.0 193 92.7
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 3.7e-97 359.0 308 65.9
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 3.7e-97 359.0 230 78.3
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 2.4e-96 356.3 237 76.4
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 3.1e-96 355.9 211 85.3
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 2.0e-95 353.2 214 84.6
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.1e-93 347.4 253 73.1
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.5e-93 346.3 228 75.4
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 1.6e-92 343.6 321 60.1
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 3.6e-92 342.4 244 72.1
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 4.7e-92 342.0 260 70.0
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 6.8e-91 338.2 214 78.0
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 3.7e-89 332.4 225 72.9
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 3.7e-89 332.4 230 72.2
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 7.8e-87 324.7 263 65.0
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 8.6e-86 321.2 228 69.7
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 5.6e-85 318.5 243 72.0
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.1e-83 312.8 237 70.5
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 4.0e-83 312.4 245 71.4
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 8.9e-83 311.2 203 78.3
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 1.6e-79 300.4 183 81.4
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 2.0e-79 300.1 207 73.4
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 8.6e-78 294.7 257 63.4
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 2.4e-72 276.6 174 79.3
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 3.2e-72 276.2 228 63.6
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 1.3e-70 270.8 209 71.8
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 6.2e-68 261.9 251 56.6
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.1e-61 241.1 179 71.5
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 5.6e-61 238.8 162 75.3
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 6.6e-54 215.3 209 53.6
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 8.7e-54 214.9 169 69.8
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 7.8e-47 191.8 142 71.8
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 4.0e-43 179.5 162 59.9
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 8.4e-41 171.8 160 57.5
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 2.7e-39 166.8 168 56.5
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 8.1e-36 155.2 251 46.2
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 1.8e-35 154.1 106 71.7
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.8e-27 127.5 274 38.3
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 5.3e-27 125.9 155 51.0
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 1.9e-24 117.5 186 44.6
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.6e-23 112.8 143 49.0
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 6.7e-22 109.0 116 56.9
AagrBONN_evm.TU.Sc2ySwM_362.419 Anthoceros agrestis HOM05D005661 ORTHO05D007997 7.4e-21 105.5 66 72.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.2e-18 98.2 245 29.4
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 3.8e-17 93.2 220 30.9
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 6.1e-15 85.9 134 47.8
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.8e-14 84.3 49 81.6
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 2.3e-14 84.0 54 72.2
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.7e-12 76.6 65 58.5
FAN13G2879 Fragaria x ananassa HOM05D005661 ORTHO05D046262 1.5e-10 71.2 209 32.5
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 2.9e-09 67.0 80 52.5
Medtr4g129075 Medicago truncatula HOM05D005661 ORTHO05D266434 1.4e-06 58.2 32 84.4


User provided reference genes

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