Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 5.2e-190 667.5 331 100.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.3e-161 572.4 335 86.3
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.9e-161 571.6 342 85.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 4.3e-160 568.2 332 84.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 5.8e-149 531.2 331 79.5
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.9e-148 528.9 328 79.3
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.9e-148 528.9 328 79.3
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 9.2e-147 523.9 320 80.0
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 7.8e-146 520.8 341 76.8
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.1e-142 510.4 333 76.6
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 8.9e-134 480.7 302 74.8
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 3.8e-132 475.3 302 73.8
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 6.4e-132 474.6 339 67.8
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 3.2e-131 472.2 300 74.3
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.3e-129 466.8 299 73.9
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 6.6e-129 464.5 319 68.3
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.9e-128 463.0 327 68.5
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 3.3e-128 462.2 300 72.7
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.6e-127 459.9 326 68.1
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 3.6e-127 458.8 294 73.1
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 4.8e-127 458.4 298 73.2
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.1e-126 457.2 309 71.5
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.4e-126 456.8 300 71.7
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.0e-126 455.3 300 70.7
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 5.3e-126 454.9 301 72.1
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.7e-124 449.9 325 64.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 3.8e-124 448.7 328 67.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.9e-124 448.4 327 65.4
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.4e-124 447.6 294 72.8
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.4e-124 447.6 302 71.2
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.1e-123 447.2 293 74.1
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.9e-123 446.4 301 68.1
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.2e-123 445.3 305 68.5
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 5.4e-123 444.9 300 70.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-122 443.0 294 71.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.1e-122 443.0 294 71.1
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 2.1e-122 443.0 296 70.3
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.6e-122 441.8 294 70.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-121 440.7 302 70.9
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.0e-121 440.7 325 64.9
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.7e-121 439.9 294 69.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.3e-121 439.5 333 65.8
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.3e-121 439.5 333 65.8
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.3e-121 439.5 328 65.2
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 3.9e-121 438.7 295 70.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 5.1e-121 438.3 300 69.3
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.1e-120 437.2 330 64.5
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.1e-120 437.2 330 64.5
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.9e-120 436.4 297 68.4
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.9e-120 436.4 294 69.0
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-120 435.3 303 68.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 4.3e-120 435.3 324 65.7
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 5.6e-120 434.9 303 68.6
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.6e-120 434.9 335 64.2
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 5.6e-120 434.9 294 70.4
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-119 433.0 317 65.9
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.1e-119 433.0 302 68.5
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 2.1e-119 433.0 299 68.6
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 2.8e-119 432.6 331 64.4
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.6e-119 432.2 294 70.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 3.6e-119 432.2 316 66.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 6.2e-119 431.4 301 69.1
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.1e-119 431.0 334 63.8
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 8.1e-119 431.0 327 64.8
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.4e-118 430.3 315 67.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.4e-118 430.3 294 70.4
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.4e-118 429.5 294 69.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.1e-118 429.1 295 69.5
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 327 64.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 302 66.9
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 6.9e-118 427.9 351 61.0
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.5e-117 426.8 336 64.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.0e-117 426.4 347 62.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.6e-117 426.0 294 68.0
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 3.4e-117 425.6 308 66.2
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 7.6e-117 424.5 301 66.4
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.8e-116 422.2 295 68.1
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.4e-115 419.5 332 62.3
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.1e-115 417.9 325 63.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 9.3e-115 417.5 302 68.2
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.6e-114 416.8 300 68.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.7e-114 416.0 294 67.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 6.0e-114 414.8 299 67.6
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.0e-114 414.8 303 65.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.9e-113 412.1 312 63.1
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 6.7e-113 411.4 304 65.8
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 8.7e-113 411.0 303 65.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-112 409.8 293 66.6
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.9e-112 409.8 293 66.6
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.5e-112 409.5 288 67.7
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.5e-112 409.5 325 60.9
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 3.3e-112 409.1 303 65.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.3e-111 407.1 333 61.0
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-111 405.6 293 65.5
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 8.1e-111 404.4 294 64.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-110 401.7 334 61.1
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 1.2e-109 400.6 332 58.7
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 3.8e-108 395.6 301 64.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.1e-106 389.8 294 63.3
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.1e-106 389.8 354 57.1
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.1e-104 384.0 266 65.0
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.5e-104 383.6 299 61.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.5e-104 382.9 258 69.0
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.4e-104 381.3 319 60.5
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.8e-103 379.4 299 61.2
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.3e-103 378.3 299 60.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.8e-102 376.7 301 60.5
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.9e-102 374.8 295 62.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.2e-98 364.0 336 56.8
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.9e-98 361.3 296 57.4
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.1e-94 349.0 295 54.9
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 7.2e-91 338.2 294 56.5
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.1e-90 336.7 272 61.0
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.6e-90 335.9 293 58.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.3e-88 328.9 289 54.7
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 6.9e-86 321.6 307 50.8
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 2.9e-84 316.2 311 55.9
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.1e-80 304.3 256 57.4
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 3.1e-78 296.2 257 57.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 4.7e-74 282.3 269 50.6
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.7e-74 282.3 347 42.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.8e-71 273.1 291 45.7
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.9e-69 265.4 199 64.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.2e-67 259.6 298 43.3
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 7.2e-67 258.5 292 41.8
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 3.0e-65 253.1 297 43.4
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 6.8e-65 251.9 268 48.1
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.3e-63 245.0 162 70.4
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.4e-62 244.2 201 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.3e-60 237.7 260 46.9
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.6e-58 230.7 172 62.8
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 4.0e-49 199.5 225 46.2
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.0e-41 174.9 281 34.5
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.1e-38 164.9 84 89.3
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.2e-38 163.3 118 62.7
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 5.4e-30 136.0 101 66.3
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.9e-28 129.8 111 51.4
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 5.1e-28 129.4 114 53.5
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 9.5e-27 125.2 73 76.7
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-26 124.8 100 56.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.2e-26 124.8 100 56.0
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.4e-25 121.3 68 80.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 5.8e-24 115.9 76 69.7
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.9e-22 110.9 87 56.3
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-21 106.7 100 50.0
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.5e-19 100.5 80 55.0
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.6e-19 99.4 177 36.7
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 8.9e-17 92.0 121 38.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-16 90.5 58 70.7
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-14 84.3 60 63.3
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 8.7e-12 75.5 47 74.5
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.3e-11 72.4 64 54.7
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.6e-10 70.1 57 50.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.8e-10 69.7 96 42.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-09 66.2 50 58.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.5e-08 64.7 92 30.4


User provided reference genes

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